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Pipeline to analyse the allen datasets

The aim of this project is to discover stable clusters shared by all MOp datasets. There are 6 datasets:

  • SMARTer_cells_MOp
  • SMARTer_nuclei_MOp
  • 10x_cells_MOp (V2)
  • 10x_nuclei_MOp (V2)
  • 10x_v3_cells_MOp
  • 10x_v3_nuclei_MOp

We follow this workflow for each dataset:

Refer to the main directory for all analyses conducted.

The preprint can be found here and the Dune R package can be explored here.

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