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0aea3c3
COMP: Initial add for source
May 15, 2014
4104fdb
BUG: workaround degenerate direction matrix
May 15, 2014
370dd7d
COMP: Added ITK wrapping subdirectory
May 15, 2014
0f1c722
BUG: Add export linkage specification to external classes.
blowekamp Nov 24, 2014
8e0001e
BUG: Add missing FDFImageIOFactoryRegister__Private method
blowekamp Nov 24, 2014
6d44b50
ENH: Merge pull request #1 from blowekamp/AddRegisterAndExport
blowekamp Dec 4, 2014
f07f7b5
BUG: Rename Module to IOFDF
blowekamp Dec 12, 2014
6bbb3e3
ENH: Merge pull request #2 from blowekamp/FixModuleNamingConvention
blowekamp Dec 12, 2014
5079eaf
BUG: fix wrapping module name
glehmann Feb 18, 2015
6c34828
ENH: Merge pull request #3 from glehmann/wrapping-module-name
glehmann Feb 18, 2015
75d6ebc
COMP: Update itk-module.cmake
blowekamp Feb 19, 2015
dcf3c19
BUG: fix factory class name
glehmann Feb 26, 2015
bdee27c
STYLE: fixes according to KWStyle
blowekamp Mar 13, 2015
b9a5a0d
ENH: Merge pull request #4 from blowekamp/master
blowekamp Mar 13, 2015
3ab5224
BUG: Fix IOFDFInDoxygenGroup test
blowekamp Mar 31, 2015
13b276b
ENH: Merge pull request #5 from blowekamp/master
blowekamp Mar 31, 2015
0d7d2f3
BUG: Correct test function signature for windows
blowekamp Apr 3, 2015
bc8d0c5
ENH: Merge pull request #6 from blowekamp/master
blowekamp Apr 3, 2015
99e3f2c
STYLE: Add missing ITK_OVERRIDE and license headers.
thewtex May 3, 2015
558eef8
STYLE: Merge pull request #7 from thewtex/style
thewtex May 4, 2015
afdb198
ENH: Update the license header to the ISC copyright.
thewtex Jun 8, 2015
df21110
DOC: Merge pull request #8 from InsightSoftwareConsortium/LicenseHeader
thewtex Jun 8, 2015
cc31fa8
BUG: Ensure factory is registered once.
jcfr Dec 4, 2015
8dd349b
ENH: Merge pull request #9 from jcfr/3393-transform-image-io-as-shared
thewtex Dec 4, 2015
40c2b29
STYLE: Use Macro for Function Deletion
zachary-williamson Jun 29, 2016
3a6c4ba
ENH: Merge pull request #10 from zachary-williamson/master
thewtex Jul 22, 2016
bf16ff0
ENH: Add FACTORY_NAMES parameter to itk_module() declaration
Oct 26, 2017
efc12c5
ENH: Merge pull request #11 from fbudin69500/Add_FACTORY_NAMES
thewtex Nov 13, 2017
aa2d433
ENH: Require cmake minimum version to be 3.9.5.
Jan 17, 2018
bf533ac
COMP: Merge pull request #12 from jhlegarreta/ChangeRequiredCMakeMini…
dzenanz Jan 19, 2018
1f70ee0
ENH: ITKv5 override consistency
hjmjohnson Dec 17, 2017
1cca8f2
COMP: Use C++11 override directly
hjmjohnson Dec 17, 2017
6245535
COMP: Use C++ headers over C header
hjmjohnson Jan 14, 2018
8775ca7
STYLE: Modernize to C++11 conventions
hjmjohnson Feb 12, 2018
c92b16e
STYLE: Prefer C++11 type alias over typedef
hjmjohnson Feb 13, 2018
3454011
STYLE: Prefer constexpr for const numeric literals
hjmjohnson Feb 13, 2018
12c49fb
COMP: Move ITK_DISALLOW_COPY_AND_ASSIGN calls to public section.
Apr 14, 2018
4428d1e
COMP: Set the minimum required CMake version to 3.10.2.
May 5, 2018
b98f473
COMP: Merge pull request #17 from jhlegarreta/UpdateCMakeMinimumRequi…
thewtex May 6, 2018
59bbd6e
STYLE: Use "typename" for template parameters.
jhlegarreta Oct 23, 2018
df231cb
DOC: Add license file.
jhlegarreta Nov 10, 2018
bf9b8b5
ENH: Add CI.
jhlegarreta Nov 10, 2018
77f2aac
DOC: Merge pull request #20 from jhlegarreta/AddLicenseFile
thewtex Nov 11, 2018
dd8f063
STYLE: Fix `itk-module.cmake` local variable typo.
jhlegarreta Jan 30, 2019
cbacbdb
ENH: Update enums from recent enum changes in ITK
mseng10 Feb 18, 2020
2c460ee
STYLE: Remove redundant void argument lists
hjmjohnson Feb 17, 2020
2f768b5
STYLE: Replace integer literals which are cast to bool.
hjmjohnson Feb 17, 2020
dce66d7
STYLE: Prefer = default to explicitly trivial implementations
hjmjohnson Feb 17, 2020
9b5744b
STYLE: Remove redundant void argument lists
hjmjohnson Feb 17, 2020
5272fa1
PERF: readability container size empty
hjmjohnson Feb 18, 2020
069b0c9
DOC: Update copyright assignment to NumFOCUS
hjmjohnson Feb 19, 2020
f99e07f
STYLE: Rename ITK_DISALLOW_COPY_AND_ASSIGN to ITK_DISALLOW_COPY_AND_MOVE
mseng10 Oct 14, 2020
4094524
ENH: Bump ITK and replace http with https using script
tbirdso May 31, 2022
1003028
STYLE: Add itkVirtualGetNameOfClassMacro + itkOverrideGetNameOfClassM…
hjmjohnson Jan 26, 2025
babc736
ENH: Modernize CMake to use itk_module_add_library
blowekamp Jan 27, 2026
2b9d7b9
ENH: Ingest ITKIOFDF into Modules/IO
hjmjohnson May 5, 2026
22aafa0
DOC: Add IOFDF module README pointing at archived upstream
hjmjohnson May 5, 2026
6e0b278
COMP: Remove IOFDF remote-fetch cmake (now in-tree)
hjmjohnson May 5, 2026
cf9a899
ENH: Enable Module_IOFDF in configure-ci pixi task
hjmjohnson May 5, 2026
e94fada
STYLE: gersemi-format IOFDF src/CMakeLists.txt
hjmjohnson May 5, 2026
e6fc9ab
BUG: Fix IOFDF P1 issues from Greptile review
hjmjohnson May 5, 2026
970e87d
COMP: Drop leftover IOFDF developer scratch ImageReadWrite.cxx
hjmjohnson May 5, 2026
24fd0e3
STYLE: Fix IOFDF Doxygen \ingroup tags
hjmjohnson May 5, 2026
18e6bf1
COMP: Drop redundant cmake_minimum_required from IOFDF/CMakeLists.txt
hjmjohnson May 5, 2026
e6e26ed
BUG: Fix IOFDF multi-word storage type parser (Greptile P1)
hjmjohnson May 5, 2026
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4 changes: 4 additions & 0 deletions Modules/IO/IOFDF/CMakeLists.txt
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project(IOFDF)
set(IOFDF_LIBRARIES IOFDF)

itk_module_impl()
202 changes: 202 additions & 0 deletions Modules/IO/IOFDF/LICENSE
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Apache License
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41 changes: 41 additions & 0 deletions Modules/IO/IOFDF/README.md
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# IOFDF

In-tree ITK module providing read support for the **FDF** (Flexible
Data Format) image files produced by Varian / Agilent MR scanners.
Implements `itk::FDFImageIO` and registers `itk::FDFImageIOFactory`
so FDF files are auto-detected by `itk::ImageFileReader`.

## Origin

Ingested from the standalone remote module
[**InsightSoftwareConsortium/ITKIOFDF**](https://github.com/InsightSoftwareConsortium/ITKIOFDF)
on 2026-05-05, at upstream commit
[`3a3ff84c`](https://github.com/InsightSoftwareConsortium/ITKIOFDF/commit/3a3ff84c803d4226176078d32ddd0760c71a5b2c).
The upstream repository will be archived read-only after this PR
merges; it remains reachable at the URL above.

## What lives here

Per the v4 ingestion strategy (see
`Utilities/Maintenance/RemoteModuleIngest/INGESTION_STRATEGY_v4.md`),
only paths matching the narrow whitelist
(`Utilities/Maintenance/RemoteModuleIngest/whitelists/IOFDF.list`)
crossed the merge boundary:

- `include/` — public C++ headers (`itkFDFImageIO.h`,
`itkFDFImageIOFactory.h`, `itkFDFCommonImageIO.h`).
- `src/` — implementation sources.
- `test/` — CTest drivers and content-link stubs.
- `wrapping/` — Python wrapping descriptors.
- `CMakeLists.txt`, `itk-module.cmake` — module metadata.
- `LICENSE` — original Apache-2.0 license text.

Upstream-only artifacts (CI dashboards, packaging,
`pyproject.toml`, `.github/`, etc.) were explicitly excluded; the
upstream commit graph and authorship history are otherwise preserved
through a `--no-ff --allow-unrelated-histories` Mode-A merge.

## Building

IOFDF is enabled by default once `Module_IOFDF=ON` is set; in CI it
is enabled via `pyproject.toml`'s `configure-ci` task.
100 changes: 100 additions & 0 deletions Modules/IO/IOFDF/include/itkFDFCommonImageIO.h
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/*=========================================================================
*
* Copyright NumFOCUS
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* https://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
#ifndef itkFDFCommonImageIO_h
#define itkFDFCommonImageIO_h

#include <itkFDFImageIO.h>
#include <itkIndent.h>

#include <iostream>
#include <fstream>
#include <sstream>
#include <vector>
#include <iterator>
#include <algorithm>

namespace itk
{

std::string
RemoveCharacters(std::string, char);

void
Tokenize(const std::string & str, std::vector<std::string> & tokens, const std::string & delimiters = " ");

std::string
ParseLine(std::string line);

template <typename T>
void
ConvertFromString(std::string s, T & value)
{
std::stringstream str;
str << s;
str >> value;
}

template <typename T>
void
StringToVector(std::string value, std::vector<T> & values)
{
std::vector<std::string> tokens;

// value consists of something like {256,256}
std::string::size_type startBracketPosition = value.find_first_of("{", 0);
std::string::size_type endBracketPosition = value.find_first_of("}", startBracketPosition);

if (startBracketPosition != std::string::npos && endBracketPosition != std::string::npos)
{
std::string elements = value.substr(startBracketPosition + 1, endBracketPosition - startBracketPosition - 1);


Tokenize(elements, tokens, ",");
}

T element;

for (auto & token : tokens)
{
ConvertFromString(token, element);
values.push_back(element);
}
}

template <typename T>
void
PrintVector(std::ostream & os, std::string name, const std::vector<T> & vect)
{
int size = vect.size();

os << name << " {";

for (int i = 0; i < size; i++)
{
os << vect[i];

if (i < size - 1)
os << ", ";
}

os << "}" << std::endl;
}

} // namespace itk

#endif
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