BioPhysics

Source codes and data for BioPhysics course on Bioinformatics

forcefield.py

Module for forcefield parameters management

data/vdwprm

Simple vdw parameters (based on AMBER ff using AutoDock compatible atom types)

External dependencies Bio.PDB.PDBParser (Biopython)

data/AA_PDB

Model compounds for the 20 amino acids.

Examples

Code examples for Practical Session I (BioPython)

Exercises

prob217.py

Simple script to solve Exercise 7 form 2.1 collection

prob217_noclass.py

Simple script to solve Exercise 7 form 2.1 collection. Version without python classes