spack-stack-2.0.0rc1: compile error for eckit on Narwhal with oneAPI 2024.2.0 after latest update of eckit #1837
Description
Description
==> No binary for eckit-1.32.3-lwwykhiayqmfqnifcrcrdzuufvg663yr found: installing from source
==> Warning: Intel's compilers may or may not optimize to the same degree for non-Intel microprocessors for optimizations that are not unique to Intel microprocessors
==> Using cached archive: /p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/cache/source_cache/_source-cache/archive/33/33e0fac2656cdd2f2d877dbfe7a4751ee657ab732c00dd90bd48a406298a100f.tar.gz
==> No patches needed for eckit
==> eckit: Executing phase: 'cmake'
==> Error: ProcessError: Command exited with status 1:
'/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/gcc/12.2.0/cmake-3.31.8-4gtggwa/bin/cmake' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:STRING=/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/intel-oneapi-compilers/2024.2.0/eckit-1.32.3-lwwykhi' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON' '-DCMAKE_INSTALL_RPATH:STRING=/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/intel-oneapi-compilers/2024.2.0/eckit-1.32.3-lwwykhi/lib;/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/intel-oneapi-compilers/2024.2.0/eckit-1.32.3-lwwykhi/lib64' '-DCMAKE_PREFIX_PATH:STRING=/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/gcc/12.2.0/bison-3.8.2-yj5oc7m;/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/intel-oneapi-compilers/2024.2.0/bzip2-1.0.8-2m6l4df;/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/gcc/12.2.0/cmake-3.31.8-4gtggwa;/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/none/none/compiler-wrapper-1.0-toutdiv;/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/intel-oneapi-compilers/2024.2.0/ecbuild-3.12.0-2qvlmat;/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/intel-oneapi-compilers/2024.2.0/eigen-3.4.0-yanbufc;/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/intel-oneapi-compilers/2024.2.0/flex-2.6.4-25tziv2;/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/gcc/12.2.0/gmake-4.4.1-k3cxlm5;/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/intel-oneapi-compilers/2024.2.0/lz4-1.10.0-nxhpxiy;/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/intel-oneapi-compilers/2024.2.0/ncurses-6.5-4om7pw5;/opt/cray/pe/mpich/8.1.26/ofi/intel/2022.1;/opt/intel/oneapi_2024.2.0.634;/opt/intel/oneapi_2024.2.0.634;/opt/intel/oneapi_2024.2.0.634' '-DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INTERPROCEDURAL_OPTIMIZATION:BOOL=OFF' '-DCMAKE_POLICY_DEFAULT_CMP0090:STRING=NEW' '-DCMAKE_FIND_USE_PACKAGE_REGISTRY:BOOL=OFF' '-DCMAKE_EXPORT_COMPILE_COMMANDS:BOOL=ON' '-DENABLE_EXPERIMENTAL:BOOL=OFF' '-DENABLE_BUILD_TOOLS:BOOL=ON' '-DENABLE_MPI:BOOL=ON' '-DENABLE_OMP:BOOL=ON' '-DENABLE_ECKIT_CMD:BOOL=ON' '-DENABLE_ECKIT_SQL:BOOL=ON' '-DENABLE_EIGEN:BOOL=ON' '-DENABLE_ARMADILLO:BOOL=OFF' '-DENABLE_MKL:BOOL=OFF' '-DENABLE_BZIP2:BOOL=ON' '-DENABLE_SNAPPY:BOOL=OFF' '-DENABLE_LZ4:BOOL=ON' '-DENABLE_AEC:BOOL=OFF' '-DENABLE_XXHASH:BOOL=ON' '-DENABLE_SSL:BOOL=OFF' '-DENABLE_CURL:BOOL=OFF' '-DENABLE_JEMALLOC:BOOL=OFF' '-DENABLE_UNICODE:BOOL=ON' '-DENABLE_AIO:BOOL=ON' '-DENABLE_TESTS:BOOL=OFF' '-DENABLE_EXTRA_TESTS:BOOL=OFF' '-DENABLE_DOCS:BOOL=OFF' '-DENABLE_CUDA:BOOL=OFF' '-DENABLE_VIENNACL:BOOL=OFF' '-DENABLE_RADOS:BOOL=OFF' '-DENABLE_RSYNC:BOOL=OFF' '-DENABLE_SANDBOX:BOOL=OFF' '-DBUILD_SHARED_LIBS=ON' '-DENABLE_LAPACK:BOOL=ON' '-DCURSES_NEED_NCURSES:BOOL=ON' '/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/cache/build_stage/neptune/spack-stage-eckit-1.32.3-lwwykhiayqmfqnifcrcrdzuufvg663yr/spack-src'
1 error found in build log:
91 -- eckit FOUND LZ4
92 -- LZ4_INCLUDE_DIRS : [/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_plac
eholder__/__spack_path_placeholder__/intel-oneapi-compilers/2024.2.0/lz4-1.10.0-nxhpxiy/include]
93 -- LZ4_LIBRARIES : [/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/envs/ne-oneapi-2024.2.0-build/install/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeho
lder__/__spack_path_placeholder__/intel-oneapi-compilers/2024.2.0/lz4-1.10.0-nxhpxiy/lib/liblz4.so]
94 -- Found package LZ4 required for feature LZ4
95 -- Feature LZ4 enabled
96 -- Feature AEC disabled
>> 97 CMake Error at /usr/lib64/cmake/libzip/libzip-targets.cmake:92 (message):
98 The imported target "libzip::zipcmp" references the file
99
100 "/usr/bin/zipcmp"
101
102 but this file does not exist. Possible reasons include:
103
See build log for details:
/p/app/projects/NEPTUNE/spack-stack/spack-stack-v2-rc1/cache/build_stage/neptune/spack-stage-eckit-1.32.3-lwwykhiayqmfqnifcrcrdzuufvg663yr/spack-build-out.txt
To Reproduce
Requires access to DOD HPCMP Narwhal. Try to build unified environment with Intel oneAPI 2024.2.0 using existing site config.
Note that the site config does not specify an external cmake - not sure (yet) why it is trying to use /usr/lib64/cmake/libzip/libzip-targets.cmake.
Expected behavior
Code compiles.
System, compiler, code, ...
Narwhal, Intel oneAPI 2024.2.0, unified environment
Additional context
n/a