git clone needs --recursive as external-modules/spark is a submodule #23
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
I think the because external-modules/spark is a submodule, the git clone command needs a
--recursive.When I cloned without
--recursiveand tried to run the sample data example (./examples/demo_tiny.sh) I got this error:No such file: Config file does not exist: /home/oamsalem/Downloads/multifish/external-modules/spark/nextflow.configIt was fixed when I cloned with
--recursive