Skip to content

Conversation

@orena1
Copy link
Contributor

@orena1 orena1 commented Sep 12, 2022

I think the because external-modules/spark is a submodule, the git clone command needs a --recursive.
When I cloned without --recursive and tried to run the sample data example (./examples/demo_tiny.sh) I got this error:
No such file: Config file does not exist: /home/oamsalem/Downloads/multifish/external-modules/spark/nextflow.config
It was fixed when I cloned with --recursive

I think the because external-modules/spark is a submodule, the git clone command needs a `--recursive`.
When I cloned without `--recursive` and tried to run the sample data example (./examples/demo_tiny.sh) I got this error:
No such file: Config file does not exist: /home/oamsalem/Downloads/multifish/external-modules/spark/nextflow.config
It was fixed when I cloned with `--recursive`
@krokicki krokicki requested a review from cgoina September 24, 2022 21:31
@cgoina cgoina merged commit a7dc221 into JaneliaSciComp:master Mar 7, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants