FileNotFoundError: [Errno 2] No such file or directory: './test/single-cell//data//Sst_Sstr2//train.txt'

[chuangzhao0601]

Hello author, when I reproduce the DeepTalk-singleST.ipynb file,
dt.Train(data_name = 'Sst_Sstr2/',data_path = Test_dir + '/data/',
outdir = Test_dir + '/data/Sst_Sstr2/output',
pretrained_embeddings = Test_dir + '/data/Sst_Sstr2/data_pca.emd',
n_epochs = 50,ft_n_epochs=10)

This code reports an error message:Loading graph...
FileNotFoundError: [Errno 2] No such file or directory: './test/single-cell//data//Sst_Sstr2//train.txt'

the important package versions:
deeptalk-st 0.0.4
as for other packages,I followed the Installation guidance

[codecrazer]

I also got the same error message. I think the reason is that Train.txt and validate.txt are not generated. I only got CCIlist.txt. How can I solve this issue, thank you!

[charleschuang1993]

You can use this command to generate files:
dt.data_for_train(st_data, data_dir = './test/single-cell/data/', LR_train = 'Sst_Sstr2')

However, the path should be fixed with './test/single-cell/data/' rather than './Test/single-cell/data/'