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ggaaooppeenngg wants to merge 6 commits into from
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support zsh #96

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4bd2232
support zsh
ggaaooppeenngg Mar 6, 2019
69e5842
rm mirror
ggaaooppeenngg Mar 7, 2019
98f0ef4
rm channels
ggaaooppeenngg Mar 7, 2019
22dc8d9
add channels
ggaaooppeenngg Mar 13, 2019
2c97f6b
update Dockerfile
ggaaooppeenngg Mar 15, 2019
8ebfa36
update r
ggaaooppeenngg Mar 15, 2019
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8 changes: 3 additions & 5 deletions base/Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -44,6 +44,7 @@ RUN apt-get update && apt-get -yqq dist-upgrade && \
texlive-latex-base \
texlive-latex-extra \
unzip \
zsh \
vim \
&& \
# Setup locales
Expand Down Expand Up @@ -143,16 +144,14 @@ USER $NB_USER

RUN echo "Install R and R basic packages" && \
conda config --add channels conda-forge && \
conda install -y \
conda install -c r -y \
'r-essentials=3.5.1' && \
conda config --add channels ataenzer && \
conda config --add channels jsignell && \
conda config --add channels pjones && \
conda config --add channels omgarcia && \
conda config --add channels cgat && \
conda config --add channels sebp && \
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/ && \
conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/ && \
conda install -y \
'r-tm' \
'r-rcolorbrewer' \
Expand All @@ -175,8 +174,7 @@ RUN echo "Install R and R basic packages" && \
install.packages('wordcloud'); \
install.packages('wordcloud2'); \
install.packages('xgboost'); \
install.packages('plotly');" && \
echo 'options("repos" = c(CRAN="https://mirrors.tuna.tsinghua.edu.cn/CRAN/"))' > ~/.Rprofile && \
install.packages('plotly');" \
conda clean -tipsy

# Add Julia packages. Only add HDF5 if this is not a test-only build since
Expand Down