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LabKey / DiscvrLabKeyModules Public

forked from BimberLab/DiscvrLabKeyModules

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Merge 24.7 to develop#304

Merged

bbimber merged 25 commits intodevelopLabKey/DiscvrLabKeyModules:developfrom

fb_merge_24.7_to_developLabKey/DiscvrLabKeyModules:fb_merge_24.7_to_developCopy head branch name to clipboard

Aug 5, 2024

Conversation Commits25 (25)Checks Files changed

Merged

Merge 24.7 to develop#304
bbimber merged 25 commits intodevelopfrom
fb_merge_24.7_to_develop

Commits

Commits on Jul 25, 2024

Add logging
bbimber
committed
Make HaplotypeCaller reblocking optional
bbimber
committed
Bugfix to ClassifyTNKByExpression
bbimber
committed

Commits on Jul 29, 2024

Update Liftover defaults
bbimber
committed
Support doPairwise argument for FindMarkers
bbimber
committed

Commits on Jul 30, 2024

Bugfix sort order in MergeVcfsAndGenotypesHandler
bbimber
committed
Update JBrowse dependencies
bbimber
committed
Simplify JBrowse diamond
bbimber
committed
Update cellranger arguments
bbimber
committed

Commits on Jul 31, 2024

Update cellrange VDJ to run as two passes
bbimber
committed
Bugfix to cellranger VDJ
bbimber
committed
Bugfix to cellranger VDJ
bbimber
committed
Bugfix to cellranger VDJ
bbimber
committed
Bugfix to cellranger VDJ
bbimber
committed
Bugfix to cellranger VDJ
bbimber
committed
Bugfix to cellranger VDJ
bbimber
committed

Commits on Aug 1, 2024

Improve CellRangerVDJ
bbimber
committed
Improve CellRangerVDJ import code
bbimber
committed
Improve CellRangerVDJ metrics
bbimber
committed
Improve CellRanger QC
bbimber
committed
Bugfix to CellRangerVDJ
bbimber
committed
Make CellRangerVDJ merge both filtered and all contig files
bbimber
committed
Fix merge conflicts
bbimber
committed
Update jest.setup.ts
bbimber
authored
Update JBrowse to react 18
bbimber
committed

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