Consolidate bootstrap scripts to 0.00-18.20.sql

resources/schemas/dbscripts/postgresql/mq-15.20-15.30.sql → resources/schemas/dbscripts/postgresql/mq-0.00-18.20.sql

@@ -14,7 +14,7 @@
  * limitations under the License.
  */
 
-/* mq-15.20-15.21.sql */
+/* mq-15.20-15.30.sql */
 
 CREATE SCHEMA mq;
 
@@ -324,4 +324,117 @@ CREATE TABLE mq.EvidenceRatioSilac
     CONSTRAINT PK_EvidenceRatioSilac PRIMARY KEY (Id),
     CONSTRAINT FK_EvidenceRatioSilac_Evidence FOREIGN KEY (EvidenceId) REFERENCES mq.Evidence(Id)
 );
-CREATE INDEX IX_EvidenceRatioSilac_EvidenceId ON mq.EvidenceRatioSilac (EvidenceId);
+CREATE INDEX IX_EvidenceRatioSilac_EvidenceId ON mq.EvidenceRatioSilac (EvidenceId);
+
+/* mq-18.10-18.20.sql */
+
+ALTER TABLE mq.Evidence ALTER COLUMN ModifiedPeptideId DROP NOT NULL;
+ALTER TABLE mq.Evidence ALTER COLUMN MassErrorPpm DROP NOT NULL;
+ALTER TABLE mq.Evidence ALTER COLUMN UncalibratedMassErrorPpm DROP NOT NULL;
+
+CREATE TABLE mq.TMTChannel
+(
+  Id SERIAL NOT NULL,
+  Container ENTITYID NOT NULL,
+  ExperimentGroupId INT NOT NULL,
+  TagNumber INT NOT NULL,
+
+  CONSTRAINT PK_TMTChannel PRIMARY KEY (Id),
+  CONSTRAINT FK_TMTChannel_ExperimentGroupId FOREIGN KEY (ExperimentGroupId) REFERENCES mq.ExperimentGroup (Id),
+  CONSTRAINT UQ_TMTChannel UNIQUE (ExperimentGroupId, TagNumber)
+);
+CREATE INDEX IX_TMTChannel_ExperimentGroupId ON mq.TMTChannel (ExperimentGroupId);
+
+
+CREATE TABLE mq.ProteinGroupTMT
+(
+  Id SERIAL NOT NULL,
+  Container ENTITYID NOT NULL,
+  ProteinGroupId INT NOT NULL,
+  TMTChannelId INT NOT NULL,
+  ExperimentId INT, -- allow null
+  ReporterIntensity DOUBLE PRECISION NOT NULL,
+  ReporterIntensityCorrected DOUBLE PRECISION NOT NULL,
+  ReporterIntensityCount INT NOT NULL,
+
+  CONSTRAINT PK_ProteinGroupTMT PRIMARY KEY (Id),
+  CONSTRAINT FK_ProteinGroupTMT_ProteinGroupId FOREIGN KEY (ProteinGroupId) REFERENCES mq.ProteinGroup (Id),
+  CONSTRAINT FK_ProteinGroupTMT_TMTChannelId FOREIGN KEY (TMTChannelId) REFERENCES mq.TMTChannel (Id),
+  CONSTRAINT FK_ProteinGroupTMT_ExperimentId FOREIGN KEY (ExperimentId) REFERENCES mq.Experiment (Id),
+  CONSTRAINT UQ_ProteinGroupTMT UNIQUE (ProteinGroupId, TMTChannelId, ExperimentId)
+);
+CREATE INDEX IX_ProteinGroupTMT_ProteinGroupId ON mq.ProteinGroupTMT (ProteinGroupId);
+CREATE INDEX IX_ProteinGroupTMT_TMTChannelId ON mq.ProteinGroupTMT (TMTChannelId);
+CREATE INDEX IX_ProteinGroupTMT_ExperimentId ON mq.ProteinGroupTMT (ExperimentId);
+
+
+CREATE TABLE mq.PeptideTMT
+(
+  Id SERIAL NOT NULL,
+  Container ENTITYID NOT NULL,
+  PeptideId INT NOT NULL,
+  TMTChannelId INT NOT NULL,
+  ExperimentId INT, -- allow null
+  ReporterIntensity DOUBLE PRECISION NOT NULL,
+  ReporterIntensityCorrected DOUBLE PRECISION NOT NULL,
+  ReporterIntensityCount INT NOT NULL,
+
+  CONSTRAINT PK_PeptideTMT PRIMARY KEY (Id),
+  CONSTRAINT FK_PeptideTMT_PeptideId FOREIGN KEY (PeptideId) REFERENCES mq.Peptide (Id),
+  CONSTRAINT FK_PeptideTMT_TMTChannelId FOREIGN KEY (TMTChannelId) REFERENCES mq.TMTChannel (Id),
+  CONSTRAINT FK_PeptideTMT_ExperimentId FOREIGN KEY (ExperimentId) REFERENCES mq.Experiment (Id),
+  CONSTRAINT UQ_PeptideTMT UNIQUE (PeptideId, TMTChannelId, ExperimentId)
+);
+CREATE INDEX IX_PeptideTMT_PeptideId ON mq.PeptideTMT (PeptideId);
+CREATE INDEX IX_PeptideTMT_TMTChannelId ON mq.PeptideTMT (TMTChannelId);
+CREATE INDEX IX_PeptideTMT_ExperimentId ON mq.PeptideTMT (ExperimentId);
+
+
+CREATE TABLE mq.EvidenceTMT
+(
+  Id SERIAL NOT NULL,
+  Container ENTITYID NOT NULL,
+  EvidenceId INT NOT NULL,
+  TMTChannelId INT NOT NULL,
+  ExperimentId INT, -- allow null
+  ReporterIntensity DOUBLE PRECISION NOT NULL,
+  ReporterIntensityCorrected DOUBLE PRECISION NOT NULL,
+  ReporterIntensityCount INT NOT NULL,
+
+  CONSTRAINT PK_EvidenceTMT PRIMARY KEY (Id),
+  CONSTRAINT FK_EvidenceTMT_EvidenceId FOREIGN KEY (EvidenceId) REFERENCES mq.Evidence (Id),
+  CONSTRAINT FK_EvidenceTMT_TMTChannelId FOREIGN KEY (TMTChannelId) REFERENCES mq.TMTChannel (Id),
+  CONSTRAINT FK_EvidenceTMT_ExperimentId FOREIGN KEY (ExperimentId) REFERENCES mq.Experiment (Id),
+  CONSTRAINT UQ_EvidenceTMT UNIQUE (EvidenceId, TMTChannelId, ExperimentId)
+);
+CREATE INDEX IX_EvidenceTMT_EvidenceId ON mq.EvidenceTMT (EvidenceId);
+CREATE INDEX IX_EvidenceTMT_TMTChannelId ON mq.EvidenceTMT (TMTChannelId);
+CREATE INDEX IX_EvidenceTMT_ExperimentId ON mq.EvidenceTMT (ExperimentId);
+
+
+CREATE TABLE mq.ModifiedPeptideTMT
+(
+  Id SERIAL NOT NULL,
+  Container ENTITYID NOT NULL,
+  ModifiedPeptideId INT NOT NULL,
+  TMTChannelId INT NOT NULL,
+  ExperimentId INT, -- allow null
+  ReporterIntensity DOUBLE PRECISION NOT NULL,
+  ReporterIntensityCorrected DOUBLE PRECISION NOT NULL,
+  ReporterIntensityCount INT NOT NULL,
+
+  CONSTRAINT PK_ModifiedPeptideTMT PRIMARY KEY (Id),
+  CONSTRAINT FK_ModifiedPeptideTMT_ModifiedPeptideId FOREIGN KEY (ModifiedPeptideId) REFERENCES mq.ModifiedPeptide (Id),
+  CONSTRAINT FK_ModifiedPeptideTMT_TMTChannelId FOREIGN KEY (TMTChannelId) REFERENCES mq.TMTChannel (Id),
+  CONSTRAINT FK_ModifiedPeptideTMT_ExperimentId FOREIGN KEY (ExperimentId) REFERENCES mq.Experiment (Id),
+  CONSTRAINT UQ_ModifiedPeptideTMT UNIQUE (ModifiedPeptideId, TMTChannelId, ExperimentId)
+);
+CREATE INDEX IX_ModifiedPeptideTMT_ModifiedPeptideId ON mq.ModifiedPeptideTMT (ModifiedPeptideId);
+CREATE INDEX IX_ModifiedPeptideTMT_TMTChannelId ON mq.ModifiedPeptideTMT (TMTChannelId);
+CREATE INDEX IX_ModifiedPeptideTMT_ExperimentId ON mq.ModifiedPeptideTMT (ExperimentId);
+
+DROP INDEX mq.IX_TMTChannel_ExperimentGroupId;
+DROP INDEX mq.IX_ProteinGroupTMT_ProteinGroupId;
+DROP INDEX mq.IX_PeptideTMT_PeptideId;
+DROP INDEX mq.IX_EvidenceTMT_EvidenceId;
+DROP INDEX mq.IX_ModifiedPeptideTMT_ModifiedPeptideId;

resources/schemas/dbscripts/sqlserver/mq-18.10-18.20.sql → resources/schemas/dbscripts/sqlserver/mq-0.00-18.20.sql

@@ -14,7 +14,12 @@
  * limitations under the License.
  */
 
-/* mq-18.10-18.11.sql */
+/* mq-15.20-15.30.sql */
+
+CREATE SCHEMA mq;
+GO
+
+/* mq-18.10-18.20.sql */
 
 -- ExperimentGroup table
 CREATE TABLE mq.ExperimentGroup
@@ -341,14 +346,10 @@ CREATE TABLE mq.EvidenceRatioSilac
 CREATE INDEX IX_EvidenceRatioSilac_EvidenceId
   ON mq.EvidenceRatioSilac (EvidenceId);
 
-/* mq-18.11-18.12.sql */
-
 ALTER TABLE mq.Evidence  ALTER COLUMN ModifiedPeptideId INT NULL;
 ALTER TABLE mq.Evidence  ALTER COLUMN MassErrorPpm DOUBLE PRECISION NULL;
 ALTER TABLE mq.Evidence  ALTER COLUMN UncalibratedMassErrorPpm DOUBLE PRECISION NULL;
 
-/* mq-18.12-18.13.sql */
-
 CREATE TABLE mq.TMTChannel
 (
   Id INT IDENTITY(1, 1) NOT NULL,
@@ -450,8 +451,6 @@ CREATE INDEX IX_ModifiedPeptideTMT_ModifiedPeptideId ON mq.ModifiedPeptideTMT (M
 CREATE INDEX IX_ModifiedPeptideTMT_TMTChannelId ON mq.ModifiedPeptideTMT (TMTChannelId);
 CREATE INDEX IX_ModifiedPeptideTMT_ExperimentId ON mq.ModifiedPeptideTMT (ExperimentId);
 
-/* mq-18.13-18.14.sql */
-
 DROP INDEX IX_TMTChannel_ExperimentGroupId ON mq.TMTChannel;
 DROP INDEX IX_ProteinGroupTMT_ProteinGroupId ON mq.ProteinGroupTMT;
 DROP INDEX IX_PeptideTMT_PeptideId ON mq.PeptideTMT;