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Item 7554: LuminexRunAsyncContext test in commonAssays #217

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Merged
labkey-ankurj merged 1 commit into from
Jul 27, 2020
Merged

Item 7554: LuminexRunAsyncContext test in commonAssays #217

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2 changes: 1 addition & 1 deletion luminex/src/org/labkey/luminex/LuminexModule.java
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Original file line number Diff line number Diff line change
Expand Up @@ -101,7 +101,7 @@ public Set<Class> getUnitTests()
AssayQCFlagColumn.TestCase.class,
LuminexDataHandler.TestCase.class,
LuminexExcelParser.TestCase.class,
// LuminexRunAsyncContext.TestCase.class,
LuminexRunAsyncContext.TestCase.class,
LuminexSaveExclusionsForm.TestCase.class
);
}
Expand Down
114 changes: 58 additions & 56 deletions luminex/src/org/labkey/luminex/LuminexRunAsyncContext.java
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Original file line number Diff line number Diff line change
Expand Up @@ -15,14 +15,16 @@
*/
package org.labkey.luminex;

import org.apache.logging.log4j.Level;
import org.apache.logging.log4j.Logger;
import org.apache.logging.log4j.simple.SimpleLogger;
import org.apache.logging.log4j.util.PropertiesUtil;
import org.junit.Assert;
import org.junit.Test;
import org.labkey.api.assay.pipeline.AssayRunAsyncContext;
import org.labkey.api.data.ColumnInfo;
import org.labkey.api.exp.ExperimentException;
import org.labkey.api.exp.property.DomainProperty;
import org.labkey.api.assay.pipeline.AssayRunAsyncContext;
import org.apache.logging.log4j.Logger;
import org.apache.logging.log4j.LogManager;
import org.labkey.luminex.model.SinglePointControl;
import org.labkey.luminex.model.Titration;
import org.labkey.luminex.query.LuminexProtocolSchema;
Expand Down Expand Up @@ -264,57 +266,57 @@ public List<SinglePointControl> getSinglePointControls()
}


// public static class TestCase extends Assert
// {
//
// LuminexUnitTestContext testContext = new LuminexUnitTestContext();
// LuminexRunAsyncContext asyncContext;
//
// private static class StringLogger extends Logger
// {
// StringBuilder sb = new StringBuilder();
// private StringLogger()
// {
// super("");
// }
//
// @Override
// public void info(Object append)
// {
// sb.append(append);
// sb.append("\n");
// }
//
// public String toString()
// {
// return sb.toString();
// }
// }
//
// @Test
// public void checkLogging() throws Exception
// {
// asyncContext = new LuminexRunAsyncContext(testContext);
// StringLogger sl = new StringLogger();
// asyncContext.logProperties(sl);
// String output = sl.toString();
//
// assert(output.contains("Analyte 1"));
// assert(output.contains("Analyte 2"));
// assert(output.contains("Batch Name: Name of the Batch"));
// assert(output.contains("* New"));
// assert(output.contains("Assay ID: Log Test"));
// assert(output.contains("Run Comments: Test Comments"));
// assert(output.contains("Run Name: Name of the Run"));
// assert(output.contains("Name: Name of the Project"));
// assert(output.contains("*PositivityThreshold: 50.0"));
// assert(output.contains("*NegativeBead: Blank (3)"));
// assert(output.contains("Standard: true"));
// assert(output.contains("QC Control: false"));
// assert(output.contains("Other Control: true"));
// assert(output.contains("Unknown: false"));
// assert(output.contains("Single Point Control: true"));
// }
//
// }
public static class TestCase extends Assert
{

LuminexUnitTestContext testContext = new LuminexUnitTestContext();
LuminexRunAsyncContext asyncContext;

private static class StringLogger extends SimpleLogger
{
StringBuilder sb = new StringBuilder();
private StringLogger()
{
super("", Level.INFO, false, false, false, false, "", null, new PropertiesUtil(PropertiesUtil.getSystemProperties()), null);
}

@Override
public void info(Object append)
{
sb.append(append);
sb.append("\n");
}

public String toString()
{
return sb.toString();
}
}

@Test
public void checkLogging() throws Exception
{
asyncContext = new LuminexRunAsyncContext(testContext);
StringLogger sl = new StringLogger();
asyncContext.logProperties(sl);
String output = sl.toString();

assert(output.contains("Analyte 1"));
assert(output.contains("Analyte 2"));
assert(output.contains("Batch Name: Name of the Batch"));
assert(output.contains("* New"));
assert(output.contains("Assay ID: Log Test"));
assert(output.contains("Run Comments: Test Comments"));
assert(output.contains("Run Name: Name of the Run"));
assert(output.contains("Name: Name of the Project"));
assert(output.contains("*PositivityThreshold: 50.0"));
assert(output.contains("*NegativeBead: Blank (3)"));
assert(output.contains("Standard: true"));
assert(output.contains("QC Control: false"));
assert(output.contains("Other Control: true"));
assert(output.contains("Unknown: false"));
assert(output.contains("Single Point Control: true"));
}

}
}