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Issue 37145: Sequest Peptide Search not appearing due to server confusion about variant to use for configuration #3

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labkey-jeckels wants to merge 6 commits into from
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Issue 37145: Sequest Peptide Search not appearing due to server confusion about variant to use for configuration #3

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adcd90d
Secure Issue 36967: SQL Injection in LabKey SQL via LeveyJennings rep…
cnathe Mar 14, 2019
f67ab6a
Sampleset delete perf
Mar 14, 2019
6b7b5d5
Use new parameterized method for getting paths to platform modules an…
labkey-susanh Mar 20, 2019
72c9bca
Don't apply java plugin and labkey Module plugin to internal and api …
labkey-susanh Mar 20, 2019
32e2d60
Merge remote-tracking branch 'origin/develop' into develop
Apr 1, 2019
551d0d7
Issue 37145 - Sequest Peptide Search not appearing due to
Apr 1, 2019
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5 changes: 0 additions & 5 deletions ms2/src/org/labkey/ms2/MS2Module.java
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Original file line number Diff line number Diff line change
Expand Up @@ -77,8 +77,6 @@
import org.labkey.ms2.pipeline.sequest.SequestPipelineProvider;
import org.labkey.ms2.pipeline.sequest.SequestSearchTask;
import org.labkey.ms2.pipeline.sequest.ThermoSequestParamsBuilder;
import org.labkey.ms2.pipeline.sequest.UWSequestParamsBuilder;
import org.labkey.ms2.pipeline.sequest.UWSequestSearchTask;
import org.labkey.ms2.pipeline.tandem.XTandemPipelineProvider;
import org.labkey.ms2.protein.CustomAnnotationSet;
import org.labkey.ms2.protein.CustomProteinListView;
Expand Down Expand Up @@ -423,10 +421,7 @@ public Set<Class> getUnitTests()
NaturalNumberParamsValidator.TestCase.class,
MultipleIntegerParamsValidator.TestCase.class,
MultipleDoubleParamsValidator.TestCase.class,
UWSequestParamsBuilder.TestCase.class,
UWSequestSearchTask.TestCase.class,
ProteinCoverageMapBuilder.TestCase.class,
UWSequestSearchTask.TestCase.class,
Comet2014ParamsBuilder.LimitedParseTestCase.class,
Comet2015ParamsBuilder.LimitedParseTestCase.class,
TPPTask.TestCase.class,
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4 changes: 2 additions & 2 deletions ms2/src/org/labkey/ms2/pipeline/sequest/SequestPipelineProvider.java
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Expand Up @@ -46,15 +46,15 @@
* Date: Aug 24, 2006
* Time: 12:45:45 PM
*/
public class SequestPipelineProvider extends AbstractMS2SearchPipelineProvider<AbstractSequestSearchTaskFactory>
public class SequestPipelineProvider extends AbstractMS2SearchPipelineProvider<SequestSearchTask.Factory>
{
private static final String ACTION_LABEL = "Sequest Peptide Search";

public static String name = "Sequest";

public SequestPipelineProvider(Module owningModule)
{
super(name, owningModule, AbstractSequestSearchTaskFactory.class);
super(name, owningModule, SequestSearchTask.Factory.class);
}

public boolean isStatusViewableFile(Container container, String name, String basename)
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