USDA pain level notification

onprc_ehr/resources/queries/onprc_ehr/Procedures_Missing_PainLevels.sql

@@ -0,0 +1,13 @@
+-- This query extracts the active procedures with missing USDA pain categories.
+-- Set the date range to 1 year back from curr date
+Select
+    e.id,
+    e.project,
+    e.date,
+    p.name,
+    p.PainCategories
+From study.encounters e, ehr_lookups.procedures p
+Where e.procedureid = p.rowid
+And p.active = 'true'
+And p.PainCategories IS NULL
+And date > timestampadd(SQL_TSI_YEAR,-1,now())

onprc_ehr/resources/scripts/onprc_ehr/onprc_triggers.js

@@ -379,6 +379,30 @@ exports.init = function(EHR){
         }
     });
 
+    // Added by Kollil, 12/22/2022: USDA Pain category validation:
+    /* This is user input validation for Procedures panel
+    1. Stop the user if the user attempts to fill in USDA pain level while creating / modifying a procedure other than the IS team personnel.
+    */
+    EHR.Server.TriggerManager.registerHandlerForQuery(EHR.Server.TriggerManager.Events.BEFORE_UPSERT, 'ehr_lookups', 'procedures', function(helper, scriptErrors, row, oldRow) {
+        //console.log(" 0. procedure: " + row.procedureid + ", ins: " + row.instructions);
+
+        // When users other than IS team entering the procedure data, stop them until they clear the USDA pain level field data
+        /*
+        Lakshmi Kolli - 1008
+        Gary Jones - 1011
+        Raymond Blasa - 1007
+        Lindsay Amor - 2217
+        Brent Logan - 2933
+         */
+        if (row.PainCategories != null) {
+            if ( LABKEY.Security.currentUser.id !== 1008 || LABKEY.Security.currentUser.id !== 1007 || LABKEY.Security.currentUser.id !== 1011 || LABKEY.Security.currentUser.id !== 2217 || LABKEY.Security.currentUser.id !== 2933 )
+            {
+                EHR.Server.Utils.addError(scriptErrors, 'PainCategories', 'The USDA pain category field must be left blank if the user is not from ISE team!', 'WARN');
+            }
+        }
+
+    });
+
     EHR.Server.TriggerManager.registerHandlerForQuery(EHR.Server.TriggerManager.Events.BEFORE_UPSERT, 'study', 'encounters', function(helper, scriptErrors, row, oldRow)
     {
         if (row.chargetype == 'Research Staff' && !row.assistingstaff && row.procedureid && triggerHelper.requiresAssistingStaff(row.procedureid))
@@ -1155,7 +1179,6 @@ exports.init = function(EHR){
             }
         });
 
-
         //Added 3-5-2019  R.Blasa
         EHR.Server.TriggerManager.registerHandlerForQuery(EHR.Server.TriggerManager.Events.AFTER_INSERT, 'ehr',  'project', function(helper, scriptErrors, row, oldRow){
 

onprc_ehr/src/org/labkey/onprc_ehr/ONPRC_EHRModule.java

@@ -200,6 +200,9 @@ protected void doStartupAfterSpringConfig(ModuleContext moduleContext)
         //Added Mar 18th, 2021 Kollil
         ns.registerNotification(new HousingTransferNotification(this));
 
+        //Added Dec 2022, Kollil
+        ns.registerNotification(new USDAPainNotification(this));
+
         //Added 8-7-2018 R.Blasa
         ns.registerNotification(new BirthHousingMismatchNotification(this));
 

onprc_ehr/src/org/labkey/onprc_ehr/notification/ColonyAlertsNotification.java

@@ -722,7 +722,6 @@ protected void recordsEnteredMoreThan7DaysAfter(final Container c, User u, final
 
     }
 
-
     /**
      * find the total finalized records with future dates
      */
@@ -1338,7 +1337,74 @@ protected void pmicServicesRequestAlert(final Container c, User u, final StringB
             msg.append("<b>WARNING: There are no scheduled PMIC procedures!</b><br><hr>");
         }
     }
-    //End of PMIC services alert
+    //End of PMIC alert
+
+    /**
+     * Kollil, 12/22/2022 : Find the procedure entries where the PainCategory on the procedure is not defined (IS NULL).
+     * This email notification is sent to Jeff every Thursday at 7:30am.
+     */
+    protected void proceduresWithoutUSDAPainLevels(final Container c, User u, final StringBuilder msg)
+    {
+        if (QueryService.get().getUserSchema(u, c, "onprc_ehr") == null) {
+            msg.append("<b>Warning: The onprc_ehr schema has not been enabled in this folder, so the alert cannot run!<p><hr>");
+            return;
+        }
+
+        //procedures query
+        TableInfo ti = QueryService.get().getUserSchema(u, c, "onprc_ehr").getTable("Procedures_Missing_PainLevels", ContainerFilter.Type.AllFolders.create(c, u));
+        //((ContainerFilterable) ti).setContainerFilter(ContainerFilter.Type.AllFolders.create(c, u));
+        TableSelector ts = new TableSelector(ti, null, null);
+        long count = ts.getRowCount();
+
+        if (count > 0) {//procedures count
+            msg.append("<br><b>Active procedures with missing USDA categories:</b><br><br>");
+            msg.append("<b>" + count + " procedure(s) found:</b>");
+            msg.append("<p><a href='" + getExecuteQueryUrl(c, "onprc_ehr", "Procedures_Missing_PainLevels", null) + "'>Click here to view the procedures in PRIME</a></p>\n");
+            msg.append("<hr>");
+        }
+
+        if (count == 0) {
+            msg.append("<b>Currently, there are no active procedures with missing USDA categories!</b><hr>");
+        }
+
+        //Display the daily report in the email
+        if (count > 0)
+        {
+            Set<FieldKey> columns = new HashSet<>();
+            columns.add(FieldKey.fromString("Id"));
+            columns.add(FieldKey.fromString("project"));
+            columns.add(FieldKey.fromString("date"));
+            columns.add(FieldKey.fromString("name"));
+            columns.add(FieldKey.fromString("PainCategories"));
+
+            final Map<FieldKey, ColumnInfo> colMap = QueryService.get().getColumns(ti, columns);
+            TableSelector ts2 = new TableSelector(ti, colMap.values(), null, null);
+
+            // Table header
+            msg.append("<br><br><table border=1 style='border-collapse: collapse;'>");
+            msg.append("<tr bgcolor = " + '"' + "#00FF7F" + '"' + "style='font-weight: bold;'>");
+            msg.append("<td> Id </td><td> Center Project </td><td> Date </td><td> Procedure </td><td> USDA Categories </td></tr>");
+
+            ts2.forEach(new Selector.ForEachBlock<ResultSet>()
+            {
+                @Override
+                public void exec(ResultSet object) throws SQLException
+                {
+                    Results rs = new ResultsImpl(object, colMap);
+                    String url = getParticipantURL(c, rs.getString("Id"));
+
+                    msg.append("<td>" + PageFlowUtil.filter(rs.getString("Id")) + "</td>");
+                    msg.append("<td>" + PageFlowUtil.filter(rs.getString("project")) + "</td>");
+                    msg.append("<td>" + PageFlowUtil.filter(rs.getString("date")) + "</td>");
+                    msg.append("<td>" + PageFlowUtil.filter(rs.getString("name")) + "</td>");
+                    msg.append("<td>" + PageFlowUtil.filter(rs.getString("PainCategories")) + "</td>");
+                    msg.append("</tr>");
+                }
+            });
+            msg.append("</table>");
+        }
+    }
+    //End of USDA Pain levels alert
 
     /**
      * Kollil, 03/18/2021 : Housing transfer notifications Daily

onprc_ehr/src/org/labkey/onprc_ehr/notification/USDAPainNotification.java

@@ -0,0 +1,102 @@
+/*
+ * Copyright (c) 2013-2016 LabKey Corporation
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.labkey.onprc_ehr.notification;
+
+import org.apache.commons.lang3.StringUtils;
+import org.labkey.api.data.AbstractTableInfo;
+import org.labkey.api.data.CompareType;
+import org.labkey.api.data.Container;
+import org.labkey.api.data.Selector;
+import org.labkey.api.data.SimpleFilter;
+import org.labkey.api.data.Sort;
+import org.labkey.api.data.TableInfo;
+import org.labkey.api.data.TableSelector;
+import org.labkey.api.ehr.EHRService;
+import org.labkey.api.ldk.LDKService;
+import org.labkey.api.module.Module;
+import org.labkey.api.query.FieldKey;
+import org.labkey.api.query.QueryService;
+import org.labkey.api.query.UserSchema;
+import org.labkey.api.security.User;
+import org.labkey.api.settings.AppProps;
+import org.labkey.api.util.PageFlowUtil;
+import org.labkey.api.data.ColumnInfo;
+import org.labkey.api.data.Results;
+import org.labkey.api.data.ResultsImpl;
+
+import java.sql.ResultSet;
+import java.sql.SQLException;
+import java.util.ArrayList;
+import java.util.HashSet;
+import java.util.Date;
+import java.util.Map;
+import java.util.List;
+import java.util.Set;
+import java.util.TreeSet;
+
+/**
+ * User: Kollil
+ * Date: 12/19/2022
+ * Time: 2:25 PM
+ */
+public class USDAPainNotification extends ColonyAlertsNotification
+{
+    public USDAPainNotification(Module owner)
+    {
+        super(owner);
+    }
+
+    @Override
+    public String getName()
+    {
+        return "USDA Categories Notification";
+    }
+
+    @Override
+    public String getEmailSubject(Container c)
+    {
+        return "Procedure(s) with missing USDA categories: " + getDateTimeFormat(c).format(new Date());
+    }
+
+    @Override
+    public String getCronString()
+    {
+        return "0 30 7 ? * THU";
+    }
+
+    @Override
+    public String getScheduleDescription()
+    {
+        return "every Thursday at 7:30Am";
+    }
+
+    @Override
+    public String getDescription()
+    {
+        return "The report is designed to provide a list of procedures with no USDA categories.";
+    }
+
+    @Override
+    public String getMessageBodyHTML(Container c, User u)
+    {
+        StringBuilder msg = new StringBuilder();
+
+        proceduresWithoutUSDAPainLevels(c, u, msg);
+
+        return msg.toString();
+    }
+
+}