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Merged
labkey-adam merged 2 commits into from
Aug 3, 2020
Merged

Consolidate bootstrap scripts to 0.00-18.20.sql #240

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Consolidate bootstrap scripts to 0.00-18.20.sql
labkey-adam Aug 1, 2020
a3f5cf6
Consolidate SQL Server bootstrap scripts to 0.00-18.20.sql
labkey-adam Aug 2, 2020
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34 changes: 33 additions & 1 deletion ...ipts/postgresql/targetedms-0.00-18.10.sql → ...ipts/postgresql/targetedms-0.00-18.20.sql
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Expand Up @@ -1699,4 +1699,36 @@ ALTER TABLE targetedms.TransitionChromInfo ADD COLUMN PointsAcrossPeak INT;

/* targetedms-17.30-18.10.sql */

ALTER TABLE targetedms.ReplicateAnnotation ALTER COLUMN Value TYPE VARCHAR(500);
ALTER TABLE targetedms.ReplicateAnnotation ALTER COLUMN Value TYPE VARCHAR(500);

/* targetedms-18.10-18.20.sql */

ALTER TABLE targetedms.Runs ADD COLUMN SkydDataId INT;

ALTER TABLE targetedms.Runs ADD CONSTRAINT FK_Runs_SkydData FOREIGN KEY (SkydDataId) REFERENCES exp.Data(RowId);


ALTER TABLE targetedms.PrecursorChromInfo ADD COLUMN ChromatogramOffset BIGINT;
ALTER TABLE targetedms.PrecursorChromInfo ADD COLUMN ChromatogramLength INT;

ALTER TABLE targetedms.Runs ADD COLUMN CalibrationCurveCount INT;
UPDATE targetedms.Runs SET CalibrationCurveCount = (SELECT COUNT(c.id) FROM targetedms.CalibrationCurve c WHERE c.RunId = targetedms.Runs.Id);

ALTER TABLE targetedms.GeneralMoleculeChromInfo ADD COLUMN ExcludeFromCalibration BOOLEAN;
UPDATE targetedms.GeneralMoleculeChromInfo SET ExcludeFromCalibration = false;

ALTER TABLE targetedms.QuantificationSettings ADD COLUMN MaxLOQBias FLOAT;
ALTER TABLE targetedms.QuantificationSettings ADD COLUMN MaxLOQCV FLOAT;
ALTER TABLE targetedms.QuantificationSettings ADD COLUMN LODCalculation VARCHAR(50);

ALTER TABLE targetedms.ExperimentAnnotations ADD COLUMN Keywords VARCHAR(200);
ALTER TABLE targetedms.ExperimentAnnotations ADD COLUMN LabHead USERID;
ALTER TABLE targetedms.ExperimentAnnotations ADD COLUMN LabHeadAffiliation VARCHAR(200);
ALTER TABLE targetedms.ExperimentAnnotations ADD COLUMN Submitter USERID;
ALTER TABLE targetedms.ExperimentAnnotations ADD COLUMN SubmitterAffiliation VARCHAR(200);
ALTER TABLE targetedms.ExperimentAnnotations ADD COLUMN pxid VARCHAR(10);

ALTER TABLE targetedms.JournalExperiment ADD COLUMN PxidRequested BOOLEAN NOT NULL DEFAULT '0';
ALTER TABLE targetedms.JournalExperiment ADD COLUMN KeepPrivate BOOLEAN NOT NULL DEFAULT '1';

ALTER TABLE targetedms.spectrumlibrary ALTER COLUMN Name TYPE VARCHAR(400);
55 changes: 0 additions & 55 deletions resources/schemas/dbscripts/postgresql/targetedms-18.10-18.20.sql
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40 changes: 39 additions & 1 deletion ...ripts/sqlserver/targetedms-0.00-18.10.sql → ...ripts/sqlserver/targetedms-0.00-18.20.sql
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Original file line number Diff line number Diff line change
Expand Up @@ -1842,4 +1842,42 @@ ALTER TABLE targetedms.TransitionChromInfo ADD PointsAcrossPeak INT;

/* targetedms-17.30-18.10.sql */

ALTER TABLE targetedms.ReplicateAnnotation ALTER COLUMN Value NVARCHAR(500);
ALTER TABLE targetedms.ReplicateAnnotation ALTER COLUMN Value NVARCHAR(500);

/* targetedms-18.10-18.20.sql */

ALTER TABLE targetedms.Runs ADD SkydDataId INT;

ALTER TABLE targetedms.Runs ADD CONSTRAINT FK_Runs_SkydData FOREIGN KEY (SkydDataId) REFERENCES exp.Data(RowId);

ALTER TABLE targetedms.PrecursorChromInfo ADD ChromatogramOffset BIGINT;
ALTER TABLE targetedms.PrecursorChromInfo ADD ChromatogramLength INT;

ALTER TABLE targetedms.Runs ADD CalibrationCurveCount INT;

GO

UPDATE targetedms.Runs SET CalibrationCurveCount = (SELECT COUNT(c.id) FROM targetedms.CalibrationCurve c WHERE c.RunId = targetedms.Runs.Id);

ALTER TABLE targetedms.GeneralMoleculeChromInfo ADD ExcludeFromCalibration BIT;

GO

UPDATE targetedms.GeneralMoleculeChromInfo SET ExcludeFromCalibration = 0;

ALTER TABLE targetedms.QuantificationSettings ADD MaxLOQBias FLOAT;
ALTER TABLE targetedms.QuantificationSettings ADD MaxLOQCV FLOAT;
ALTER TABLE targetedms.QuantificationSettings ADD LODCalculation NVARCHAR(50);

ALTER TABLE targetedms.ExperimentAnnotations ADD Keywords NVARCHAR(200);
ALTER TABLE targetedms.ExperimentAnnotations ADD LabHead USERID;
ALTER TABLE targetedms.ExperimentAnnotations ADD LabHeadAffiliation NVARCHAR(200);
ALTER TABLE targetedms.ExperimentAnnotations ADD Submitter USERID;
ALTER TABLE targetedms.ExperimentAnnotations ADD SubmitterAffiliation NVARCHAR(200);
ALTER TABLE targetedms.ExperimentAnnotations ADD pxid NVARCHAR(10);

ALTER TABLE targetedms.JournalExperiment ADD PxidRequested BIT NOT NULL DEFAULT '0';
ALTER TABLE targetedms.JournalExperiment ADD KeepPrivate BIT NOT NULL DEFAULT '1';

ALTER TABLE targetedms.spectrumlibrary ALTER COLUMN Name NVARCHAR(400);
GO
60 changes: 0 additions & 60 deletions resources/schemas/dbscripts/sqlserver/targetedms-18.10-18.20.sql
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