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Normalize With Mask

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Laura Saba edited this page Mar 19, 2014 · 2 revisions

Normalization.With.Mask.R is an R program to normalize Affymetrix 3' array data when masking out individual probes. We normally eliminate probes from expression estimates if they do not align uniquely to the current version of the genome or if they align to a region of the genome that harbors a known SNP between samples.

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