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Description
Expected behavior
A clear message that the .pdb universe cannot contain a different number of atoms from frame to frame.
Actual behavior
[superimposed_withH_C20sphere5.2_step10_sol_test.pdb.zip](https://github.com/MDAnalysis/mdanalysis/files/2213970/superimposed_withH_C20sphere5.2_step10_sol_test.pdb.zip)
ValueError: could not broadcast input array from shape (0) into shape (23,3)
Traceback (most recent call last):
are there frames?
File "/home/dresio/mdscripts/messy/clustering_env/cluster_env.py", line 20, in <module>
for ts in u.trajectory:
File "/home/dresio/software/virtualenvs/charm-mda/lib/python2.7/site-packages/MDAnalysis/coordinates/base.py", line 1197, in next
ts = self._read_next_timestep()
File "/home/dresio/software/virtualenvs/charm-mda/lib/python2.7/site-packages/MDAnalysis/coordinates/PDB.py", line 351, in _read_next_timestep
return self._read_frame(frame)
File "/home/dresio/software/virtualenvs/charm-mda/lib/python2.7/site-packages/MDAnalysis/coordinates/PDB.py", line 387, in _read_frame
self.ts.positions = tmp_buf
File "/home/dresio/software/virtualenvs/charm-mda/lib/python2.7/site-packages/MDAnalysis/coordinates/base.py", line 601, in positions
self._pos[:] = new
ValueError: could not broadcast input array from shape (0) into shape (23,3)for ts in u.trajectory:
print (ts.time)superimposed_withH_C20sphere5.2_step10_sol_test.pdb.zip
MDAnalysis version: 0.18.0, Linux Arch, Python 2.7
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