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Fix ISOMIP+ viz scripts #642

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Merged
mark-petersen merged 1 commit into from
Aug 18, 2020
Merged

Fix ISOMIP+ viz scripts #642

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2 changes: 1 addition & 1 deletion testing_and_setup/compass/ocean/isomip_plus/viz/__main__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -37,7 +37,7 @@ def main():
dsMesh = xarray.open_dataset('{}/init.nc'.format(folder))

ds = xarray.open_mfdataset('{}/timeSeriesStatsMonthly*.nc'.format(folder),
concat_dim='Time')
concat_dim='Time', combine='nested')

if args.streamfunctions:
compute_barotropic_streamfunction(dsMesh, ds, folder)
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4 changes: 2 additions & 2 deletions testing_and_setup/compass/ocean/isomip_plus/viz/plot.py
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Original file line number Diff line number Diff line change
Expand Up @@ -56,7 +56,7 @@ def __init__(self, inFolder='.', outFolder='plots', expt=0):

self.ds = xarray.open_mfdataset(
'{}/timeSeriesStatsMonthly*.nc'.format(self.inFolder),
concat_dim='Time')
concat_dim='Time', combine='nested')

try:
os.makedirs(self.outFolder)
Expand Down Expand Up @@ -226,7 +226,7 @@ def __init__(self, inFolder='.', outFolder='plots', expt=0,

self.ds = xarray.open_mfdataset(
'{}/timeSeriesStatsMonthly*.nc'.format(self.inFolder),
concat_dim='Time')
concat_dim='Time', combine='nested')

self._compute_section_x_z()

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5 changes: 3 additions & 2 deletions testing_and_setup/compass/ocean/isomip_plus/viz/streamfunction.py
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Original file line number Diff line number Diff line change
Expand Up @@ -371,7 +371,8 @@ def _interpolate_horizontal_transport_zlevel(ds, z, outFileName):

bar.finish()

dsOut = xarray.open_mfdataset(fileNames, concat_dim='Time')
dsOut = xarray.open_mfdataset(fileNames, concat_dim='Time',
combine='nested')

dsOut['xtime_startMonthly'] = ds.xtime_startMonthly
dsOut['xtime_endMonthly'] = ds.xtime_endMonthly
Expand Down Expand Up @@ -529,7 +530,7 @@ def _horizontally_bin_overturning_streamfunction(ds, dsMesh, x, osfFileName,

bar.finish()

dsOSF = xarray.open_mfdataset(fileNames, concat_dim='nx')
dsOSF = xarray.open_mfdataset(fileNames, concat_dim='nx', combine='nested')
dsOSF['xtime_startMonthly'] = ds.xtime_startMonthly
dsOSF['xtime_endMonthly'] = ds.xtime_endMonthly
dsOSF['x'] = x
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