sed: -e expression #1, char 17: unknown command: `m'

[DeenSm]

Hi MigleSur,

I'm trying to get GenAPI to work on gff files produced by bakta but I keep getting the following message

Warning: The following lines have no ID and will be excluded from the analysis:
Annotated with Bakta
Software: v1.7.0
Database: v5.0
DOI: 10.1099/mgen.0.000685
sed: -e expression #1, char 17: unknown command: `m'

I have tried the test_sample data and this works fine, so not sure what is it about my gff files it doesn't like.

Any advice would be much appreciated.

Thanks

[DeenSm]

Hi MigleSur,

found the issue, there were additional lines at the top of Bakta generated .gff files. By using: sed -i '2,7d' to remove lines 2-7 in the .gff, the script was able to run.