Project: tiny-count standalone installation option via bioconda#257
Merged
taimontgomery merged 4 commits intomasterfrom Nov 30, 2022
Merged
Project: tiny-count standalone installation option via bioconda#257taimontgomery merged 4 commits intomasterfrom
taimontgomery merged 4 commits intomasterfrom
Conversation
…EADME.md to include this installation option
Collaborator
|
Tested successfully installation of tiny-count via Conda. Tested successfully counts for ram1 data using sam files from full pipeline run. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
tiny-count can now be installed via bioconda. This installation option carries fewer dependencies and does not require a dedicated tinyRNA environment. Installation instructions have been updated in README.md.
Currently the recipe places strict version requirements on its dependencies since these are the only versions we have tested. We have discussed enhancing our testing protocol with tox to test over a wider range of versions, which should allow us to relax some of these requirements, but we'll need to reconcile the diverging identities of tinyRNA and tiny-count first.
Closes #216