tiny-count: adding classifier support to sequence-based counting#287

Merged

taimontgomery merged 5 commits intomasterfrom

Mar 6, 2023

Commits on Mar 4, 2023

Splitting up the gigantic test class in unit_tests_hts_parsing.py so that there's a class for SAM_reader, ReferenceFeatures, and CaseInsensitiveAttrs. Also moving the function for running all test …
AlexTate
committed
Adding a test suite for ReferenceSeqs. The diff on this commit is wildly out of control because I wrote the new test suite before making the previous commit
AlexTate
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Adding support for classifiers in sequence-based counting. The output format of get_matches() is consistent with that of ReferenceFeatures.get_matches(), though that doesn't factor into the current…
AlexTate
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The validation step for GFFs and SAM @SQ headers now reports when validation is complete
AlexTate
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Updating documentation to note that classifiers are used during sequence-based counting
AlexTate
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