tiny-count: BAM support#304

Merged

taimontgomery merged 18 commits intomasterfrom

May 2, 2023

Commits on Apr 23, 2023

Updating the SamplesSheet class so that it can be used in tiny-count (or any other pipeline step). This means the Samples Sheet will be subject to many of the same validation steps in tiny-count st…
AlexTate
committed
Updating load_samples() to use the SamplesSheet class. Cleaner, more consistent, and more thorough! This means that the from_here() method can be removed from util.py, which is a good thing in the …
AlexTate
committed
Changing usages of is_pipeline to in_pipeline to be consistent with the PathsFile class (and because it just makes more sense)
AlexTate
committed

Commits on Apr 24, 2023

Commits on Apr 29, 2023

Commits on Apr 30, 2023

Bringing some outdated and inconsistent section comments up to date in Paths File and Run Config
AlexTate
committed

Commits on May 1, 2023