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Version 1.4 release preparation#305

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taimontgomery merged 5 commits intomasterfrom
issue-303
May 2, 2023
Merged

Version 1.4 release preparation#305
taimontgomery merged 5 commits intomasterfrom
issue-303

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@AlexTate
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@AlexTate AlexTate commented May 1, 2023

This PR will likely need to be updated after PR #304 is merged.

  • Bowtie's trim5 and trim3 options have been removed from the Run Config
  • tiny-count's counter_all_features option has been removed from the Run Config (deprecated)
  • DGE scatter plots will now include features that have a count of zero in one of the compared conditions. Points for these features will be plotted at the very edge of the plot space as a half circle because zero can't be represented on the log scale, and approximations of zero would shrink the plot space

Closes #303

…tures that have a count of zero in just one of the two plotted conditions. These features are shown at the very edge of the plot space. Otherwise, approximating zero with some arbitrary minimum value would shrink the plot.
@AlexTate AlexTate requested a review from taimontgomery May 1, 2023 04:50
@AlexTate AlexTate changed the title Version 1.4 Version 1.4 release preparation May 1, 2023
# Conflicts:
#	tiny/cwl/tools/tiny-count.cwl
#	tiny/rna/counter/counter.py
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AlexTate commented May 2, 2023

Merge conflicts resolved

@taimontgomery
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Tested with Lib303 suite.

@taimontgomery taimontgomery merged commit 6855509 into master May 2, 2023
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Version 1.4 release preparation

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