Project: update to Python 3.10#307

Merged

taimontgomery merged 22 commits intomasterfrom

May 26, 2023

Commits on May 18, 2023

Adding Pysam 0.21 dependency to environment_3.10.yml. For some reason the prior solve only pushed it to 0.20 which is incompatible with Apple's M1/M2 processors. Updating lock files accordingly.
AlexTate
committed
Changing the default StepVector from HTSeq to Cython in the ReferenceBase class. This makes it consistent with the current argparse config
AlexTate
committed
Updating update-lockfiles.sh to allow for passing the environment file name as a commandline parameter. The default filename remains environment.yml
AlexTate
committed

Commits on May 19, 2023

Cleaning up script argument handling by using parameter expansion
AlexTate
committed

Commits on May 24, 2023