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MorrisGlr/README.md

Morris A. Aguilar, M.D., Ph.D.

I build systems that turn expert judgment into software.

Physician-trained, bioinformatician, and developer. I work where medicine, machine learning, and messy real-world data meet, and I ship tools that close the gap between how experts actually think and how software usually models them.

The Through-Line

As a bioinformatics Ph.D. and an M.D., I turn opaque, effortful, and costly expert judgment into reproducible systems: automating nuclear magnetic resonance metabolite identification, benchmarking on-device LLMs to generate patient notes within the real-world computational and privacy constraints of clinics, and translating painters' compositional logic into parametric code.

What I am Building

I build clinical AI that runs inside clinics, on local hardware, and integrated with real workflows. My focus is documentation quality, privacy-preserving inference, and tools that go beyond benchmark assumptions. In 2020, I led an NSF I-Corps project bringing an NLP tool for clinical trials into an MVP through dozens of user interviews. Good technical ideas die when they ignore workflow, so I design against that.

Selected Publications

Benchmarking On-Device Language Models as Medical Digital Scribes · First author · Under peer-review, 2026

Small language models running on local hardware can draft primary-care notes that match human quality, with no detectable age or gender bias, and no patient data ever leaving the clinic.

Neuronally Enriched Microvesicle RNAs in Parkinson's · First author · Frontiers in Neuroscience, 2023

A blood draw carries brain-derived RNA signals accurate enough to flag Parkinson's disease with 94% AUC, opening a non-invasive path to earlier diagnosis.

Semi-Automated NMR Pipeline for Environmental Exposures · First author · Pacific Symposium on Biocomputing, 2021

An automated pipeline identified 79 metabolites that a proprietary tool missed in the same smoking dataset, turning a black-box analysis into a reproducible one.

Full publication list on ORCID

Stack

Python, R, JavaScript, Three.js. PyTorch for modeling, SciSpaCy and BioClinicalBERT for clinical NLP, ROUGE / BLEU / entity-level evaluation for LLM benchmarking. Comfortable across local inference, HPC, and AWS.

Algorithmic art

I reverse-engineer painters' compositional logic into parametric 3D code. Same instinct as the clinical work, different output.

Pinned Loading

  1. Automate-QuICR Automate-QuICR Public template

    An end-to-end Python app that generates professional patient chart review and quality improvement reports. QuICR produces patient chart reviews, traditionally time-consuming and labor-intensive, us…

    Python 1 1

  2. clinical-anki-generator clinical-anki-generator Public

    Python CLI: Question bank vignettes → AI-enhanced Anki flashcards. Clerkship, shelf exam, and board exam prep for medical students and residents.

    Python

  3. creative creative Public

    A living archive of my creative work across photography, textbook sculpture, paper layering, and algorithmic art. Built with the Astro 5 framework and deployed as a live GitHub page.

    TypeScript

  4. algo-art-klint-kandinsky algo-art-klint-kandinsky Public

    Creates algorithm art animations within a browser, inspired by abstract art by Hilma af Klint and Wassily Kandinsky. Link to live demo available.

    JavaScript

  5. algo-art-hopper algo-art-hopper Public

    Creates a 3D animation of rooms inspired by Edward Hooper's paintings in a web browser. Live demo link of my algorithmic art is provided.

    JavaScript

  6. algo-art-lep-scales algo-art-lep-scales Public

    Produces a 3D animation of butterfly and moth wing scales in a web brower using Three.js. Link to in-browser demo provided.

    JavaScript 1