MakeReplica in python#866

Merged

Zaharid merged 38 commits into

python-pseudodata

Feb 26, 2021

Commits on Jan 27, 2021

A direct translation of the C++ pseudodata code
siranipour
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Loop until positivity of pseudodata is achieved
siranipour
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Using pandas and numpy to generate the pseudodata
siranipour
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Adding docstring for make_replica function
siranipour
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authored and
siranipour
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Moving to pseudodata.py
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Making the function into an infinite generator
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Adding comment explaining why we divide the multiplicative uncertainties by 100
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Update validphys2/src/validphys/covmats.py

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Changing covmat_for_sampling to additive_covmat
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Changing variable names to better reflect their purpose
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Accounting for the asymmetry edge case
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Adding information on the nature of sampling in the docstring
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Correcting covmat_from_systematics example
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Clarifying doc strings
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Setting default seed kwarg to None
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Removing make replica from covmats.py
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Adding use_mult_errors flag to datasets_covmat_from_systematics
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Adding functionality to compute pseudodata for a list of commondata
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Adding fillna(0) to special additive errors
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Changing covmats.py to not use the use_mult_errors flag
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Apply suggestions from code review - comments to split up code

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siranipour
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include stat errors

wilsonmr
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Removing if seed is None

authored and
siranipour
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Changing generator to function
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Updating doc string
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Using new numpy.random interface
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add copy to central values before generating data
wilsonmr
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Commits on Jan 28, 2021

added some tests to catch that central values are unchanged and that generated data is correct length.
wilsonmr
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Commits on Feb 3, 2021

update make replica test that commondata is unchanged to do what it says it does
wilsonmr
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Commits on Feb 8, 2021

Apply suggestions from code review

siranipour
and
wilsonmr
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Fixing rebase problems
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iterable -> list in docstring
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using API to load cd
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making make replica a provider
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index pseudodata
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Adding regression test for make_replica
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Commits on Feb 24, 2021

Merge branch 'master' into python-pseudodata
siranipour
authored