MEL long read sequencing analysis

This repository contains code to process and analyze PacBio long read sequencing data related to Reimer et al., 2021. Raw and processed data associated with this publication can be found at GEO with accession ID GSE144205.

Contents

1. Annotation files needed for mapping and data analysis
2. Code related to pre-filtering long-read sequencing data
3. Code related to data analysis and for genreating figures in Reimer et al. 2021
4. conda environment for running jupyter notebooks