Fix old showcase for 1.0 release

[hannahbaumann]

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👈 Launch a binder notebook on branch OpenFreeEnergy/ExampleNotebooks/fix_showcase

[hannahbaumann]

This PR just fixes the notebook to work with openfe 1.0 (settings, mapping), otherwise this is still the same old notebook. This is to be replaced by the new notebook soon.

[hannahbaumann]

The two notebooks that are failing here have been fixed in PR #99

[mikemhenry]

If I understand this PR correctly @richardjgowers @hannahbaumann the point is to just get the notebook we are using for http://try.openfree.energy/ to work with openfe 1.0

[mikemhenry]

colab link here:
https://colab.research.google.com/github/OpenFreeEnergy/ExampleNotebooks/blob/fix_showcase/openmm_rbfe/OpenFE_showcase_1_RBFE_of_T4lysozyme.ipynb

[mikemhenry]

looks like it can grab a GPU!

Have to make a few changes still, will ping for reviews when ready

[mikemhenry]

@richardjgowers This is ready to merge!

[mikemhenry]

Also thanks Hannah for fixing the API changes!

[mikemhenry]

we had 2 notebooks still failing on CI as @hannahbaumann noted, I pulled in changes from #99 by hand to fix those two notebooks, assuming CI passes (at least on linux), I will get this merged in!