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OpenFreeEnergy / ExampleNotebooks Public

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update ligandnetwork generation notebooks#274

Merged

atravitz merged 14 commits intomainOpenFreeEnergy/ExampleNotebooks:mainfrom

update_konnektor_notebooksOpenFreeEnergy/ExampleNotebooks:update_konnektor_notebooksCopy head branch name to clipboard

Jan 9, 2026

Conversation Commits14 (14)Checks Files changed

Merged

update ligandnetwork generation notebooks#274
atravitz merged 14 commits intomainfrom
update_konnektor_notebooks

Commits

Commits on Jan 8, 2026

copy notebook over from konnektor
atravitz
committed
consolidate building_networks_with_konnektor into generate_ligand_network
atravitz
committed
clean up explicit network cookbook
atravitz
committed
update viz notebook
atravitz
committed
revert renmae to test w/ openfe docs
atravitz
committed
polish generate_ligand_network
atravitz
committed
polish orion fepp notebook
atravitz
committed
polish explicit def notebook
atravitz
committed
move real_world_example.ipynb from konnektor repo to here
atravitz
committed
execute konnektor kartograf example
atravitz
committed

Commits on Jan 9, 2026

updating language
atravitz
committed
use kartograf mapper
atravitz
committed
add intro to konnektor/kartograf real world example
atravitz
committed
update language for clarity
atravitz
committed

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