OpenFreeEnergy · richardjgowers · Feb 16, 2023 · Feb 15, 2023 · Feb 15, 2023 · Feb 15, 2023
diff --git a/.binder/environment.yml b/.binder/environment.yml
@@ -14,11 +14,9 @@ dependencies:
   - networkx
   - nglview
   - notebook
-  - numpy<1.24
   - openff-forcefields
   - openmm
   - openmmtools
-  - openmmforcefields==0.11.2
   - pip
   - plugcli
   - pymbar
@@ -29,5 +27,5 @@ dependencies:
   - python==3.9.*
   - rdkit
   - typing_extensions
-  - gufe==0.5.*
-  - openfe==0.5.*
+  - gufe==0.6.*
+  - openfe==0.6.*
diff --git a/networks/ligand_networks_for_developers.ipynb b/networks/ligand_networks_for_developers.ipynb
diff --git a/openmm-rbfe/ApplyingProtocolToNetworkQuickrunDemo.ipynb b/openmm-rbfe/ApplyingProtocolToNetworkQuickrunDemo.ipynb
diff --git a/openmm-rbfe/OpenFE_showcase_1_RBFE_of_T4lysozyme.ipynb b/openmm-rbfe/OpenFE_showcase_1_RBFE_of_T4lysozyme.ipynb
diff --git a/openmm-rbfe/Untitled.ipynb b/openmm-rbfe/Untitled.ipynb
diff --git a/setup/Lomap_OpenFE_Comparison.ipynb b/setup/Lomap_OpenFE_Comparison.ipynb
diff --git a/setup/openFE_AtomMappers.ipynb b/setup/openFE_AtomMappers.ipynb