Unable to run any of the storage tests in individually on local machine #1636
Description
Describe the bug
I am unable to run just one test file related to #1631. When attempting to test, I fail with the following error:
ImportError while loading conftest '/Users/ethan/Documents/work/openfe/openfe/openfe/tests/conftest.py'.
openfe/__init__.py:18: in <module>
from gufe import (
../../../../micromamba/envs/openfe_env/lib/python3.13/site-packages/gufe/__init__.py:6: in <module>
from . import tokenization, visualization
../../../../micromamba/envs/openfe_env/lib/python3.13/site-packages/gufe/tokenization.py:24: in <module>
from gufe.serialization.json import (
../../../../micromamba/envs/openfe_env/lib/python3.13/site-packages/gufe/serialization/json.py:18: in <module>
from openff.units import DEFAULT_UNIT_REGISTRY
E ImportError: cannot import name 'DEFAULT_UNIT_REGISTRY' from 'openff.units' (/Users/ethan/micromamba/envs/openfe_env/lib/python3.13/site-packages/openff/units/__init__.py)To Reproduce
Run the following:
pytest openfe/tests/storage/test_metadatastore.py in a new environment.
Software versions
- Which operating system and version did you use? (e.g. ubuntu 22.04.5) macOS 26
- Which method did you use to install this package? (e.g. conda-forge) The developer docs recommended in drafted [WIP] add contributing guidelines #1580 .
- Copy/paste the output of
conda list(or the equivalent for your package manager):
List of packages in environment: "/Users/ethan/micromamba/envs/openfe_env"
Name Version Build Channel
───────────────────────────────────────────────────────────────────────────────────────────────
_python_abi3_support 1.0 hd8ed1ab_2 conda-forge
accessible-pygments 0.0.5 pyhd8ed1ab_1 conda-forge
adjusttext 1.3.0 pyhd8ed1ab_0 conda-forge
adwaita-icon-theme 49.0 unix_0 conda-forge
aiohappyeyeballs 2.6.1 pyhd8ed1ab_0 conda-forge
aiohttp 3.13.1 py313ha205f9d_0 conda-forge
aiosignal 1.4.0 pyhd8ed1ab_0 conda-forge
alabaster 1.0.0 pyhd8ed1ab_1 conda-forge
ambertools 24.8 cuda_None_nompi_py313h224bcc0_101 conda-forge
annotated-types 0.7.0 pyhd8ed1ab_1 conda-forge
anyio 4.11.0 pyhcf101f3_0 conda-forge
apeye 1.4.1 pyhd8ed1ab_1 conda-forge
apeye-core 1.1.5 pyhd8ed1ab_1 conda-forge
appnope 0.1.4 pyhd8ed1ab_1 conda-forge
argon2-cffi 25.1.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 25.1.0 py313h6535dbc_1 conda-forge
arpack 3.9.1 nompi_h1f29f7c_102 conda-forge
arrow 1.4.0 pyhcf101f3_0 conda-forge
asttokens 3.0.0 pyhd8ed1ab_1 conda-forge
async-lru 2.0.5 pyh29332c3_0 conda-forge
atk-1.0 2.38.0 hd03087b_2 conda-forge
attrs 25.4.0 pyh71513ae_0 conda-forge
autodoc-pydantic 2.1.0 pyh3cfb1c2_1 conda-forge
autodocsumm 0.2.14 pyhd8ed1ab_0 conda-forge
azure-core 1.36.0 pyhd8ed1ab_0 conda-forge
azure-storage-blob 12.27.0 pyhd8ed1ab_0 conda-forge
azure-storage-file-datalake 12.22.0 pyhd8ed1ab_0 conda-forge
babel 2.17.0 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.14.2 pyha770c72_0 conda-forge
bleach 6.2.0 pyh29332c3_4 conda-forge
bleach-with-css 6.2.0 h82add2a_4 conda-forge
blosc 1.21.6 h7dd00d9_1 conda-forge
bokeh 2.4.3 pyhd8ed1ab_3 conda-forge
boto3 1.40.59 pyhd8ed1ab_0 conda-forge
botocore 1.40.59 pyhd8ed1ab_0 conda-forge
brotli 1.2.0 hca488c2_0 conda-forge
brotli-bin 1.2.0 hce9b42c_0 conda-forge
brotli-python 1.2.0 py313h79bbab8_0 conda-forge
bson 0.5.10 pyhd8ed1ab_0 conda-forge
bzip2 1.0.8 hd037594_8 conda-forge
c-ares 1.34.5 h5505292_0 conda-forge
c-blosc2 2.21.3 hb5916c8_0 conda-forge
ca-certificates 2025.10.5 hbd8a1cb_0 conda-forge
cachecontrol 0.14.3 pyha770c72_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cachetools 6.2.1 pyhd8ed1ab_0 conda-forge
cairo 1.18.4 h6a3b0d2_0 conda-forge
certifi 2025.10.5 pyhd8ed1ab_0 conda-forge
cffi 2.0.0 py313h224173a_1 conda-forge
cftime 1.6.4 py313h2732efb_2 conda-forge
charset-normalizer 3.4.4 pyhd8ed1ab_0 conda-forge
cinnabar 0.5.0 pyhd8ed1ab_0 conda-forge
citeproc-py 0.8.3 py313h91ac939_0 conda-forge
click 8.3.0 pyh707e725_0 conda-forge
click-option-group 0.5.6 pyhd8ed1ab_0 conda-forge
cloudpathlib 0.23.0 pyhd8ed1ab_0 conda-forge
cloudpathlib-all 0.23.0 pyhd8ed1ab_0 conda-forge
cloudpathlib-azure 0.23.0 pyhd8ed1ab_0 conda-forge
cloudpathlib-gs 0.23.0 pyhd8ed1ab_0 conda-forge
cloudpathlib-s3 0.23.0 pyhd8ed1ab_0 conda-forge
cloudpickle 3.1.1 pyhd8ed1ab_0 conda-forge
colorama 0.4.6 pyhd8ed1ab_1 conda-forge
comm 0.2.3 pyhe01879c_0 conda-forge
contourpy 1.3.3 py313hc50a443_2 conda-forge
coverage 7.11.0 py313h7d74516_0 conda-forge
cpython 3.13.9 py313hd8ed1ab_101 conda-forge
cryptography 46.0.3 py313h4d9e278_0 conda-forge
cssutils 2.11.1 pyhd8ed1ab_0 conda-forge
cycler 0.12.1 pyhd8ed1ab_1 conda-forge
cyrus-sasl 2.1.28 ha1cbb27_0 conda-forge
cytoolz 1.1.0 py313h6535dbc_1 conda-forge
dask 2023.3.0 pyhd8ed1ab_0 conda-forge
dask-core 2023.3.0 pyhd8ed1ab_0 conda-forge
dask-jobqueue 0.9.0 pyhd8ed1ab_0 conda-forge
debugpy 1.8.17 py313hc37fe24_0 conda-forge
decorator 5.2.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
dict2css 0.3.0.post1 pyhd8ed1ab_1 conda-forge
dicttoxml 1.7.16 pyhd8ed1ab_1 conda-forge
dill 0.4.0 pyhd8ed1ab_0 conda-forge
distributed 2023.3.0 pyhd8ed1ab_0 conda-forge
docutils 0.21.2 pyhd8ed1ab_1 conda-forge
domdf-python-tools 3.10.0 pyhff2d567_0 conda-forge
duecredit 0.9.3 pyhd8ed1ab_1 conda-forge
epoxy 1.5.10 hc919400_2 conda-forge
exceptiongroup 1.3.0 pyhd8ed1ab_0 conda-forge
execnet 2.1.1 pyhd8ed1ab_1 conda-forge
executing 2.2.1 pyhd8ed1ab_0 conda-forge
fftw 3.3.10 nompi_h6637ab6_110 conda-forge
filelock 3.20.0 pyhd8ed1ab_0 conda-forge
fire 0.7.1 pyhd8ed1ab_0 conda-forge
flexcache 0.3 pyhd8ed1ab_1 conda-forge
flexparser 0.4 pyhd8ed1ab_1 conda-forge
font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge
font-ttf-inconsolata 3.000 h77eed37_0 conda-forge
font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge
font-ttf-ubuntu 0.83 h77eed37_3 conda-forge
fontconfig 2.15.0 h1383a14_1 conda-forge
fonts-conda-ecosystem 1 0 conda-forge
fonts-conda-forge 1 0 conda-forge
fonttools 4.60.1 py313h7d74516_0 conda-forge
fqdn 1.5.1 pyhd8ed1ab_1 conda-forge
freetype 2.14.1 hce30654_0 conda-forge
freetype-py 2.3.0 pyhd8ed1ab_0 conda-forge
fribidi 1.0.16 hc919400_0 conda-forge
frozenlist 1.7.0 py313hf28abc0_0 conda-forge
fsspec 2025.9.0 pyhd8ed1ab_0 conda-forge
gdk-pixbuf 2.44.4 h7542897_0 conda-forge
glib-tools 2.86.0 hb9d6e3a_1 conda-forge
gmp 6.3.0 h7bae524_2 conda-forge
gmpy2 2.2.1 py313h6d8efe1_1 conda-forge
google-api-core 2.25.2 pyhd8ed1ab_0 conda-forge
google-auth 2.41.1 pyhd8ed1ab_0 conda-forge
google-cloud-core 2.4.3 pyhd8ed1ab_0 conda-forge
google-cloud-storage 3.4.1 pyhd8ed1ab_0 conda-forge
google-crc32c 1.7.1 py313h7962f2b_1 conda-forge
google-resumable-media 2.7.2 pyhd8ed1ab_2 conda-forge
googleapis-common-protos 1.70.0 pyhd8ed1ab_0 conda-forge
graphite2 1.3.14 hec049ff_2 conda-forge
graphviz 13.1.2 hcd33d8b_0 conda-forge
greenlet 3.2.4 py313hb4b7877_1 conda-forge
griddataformats 1.0.2 pyhd8ed1ab_1 conda-forge
grpcio 1.71.0 py313he3ef9dc_1 conda-forge
gsd 4.2.0 h9bff6d5_0 conda-forge
gtk3 3.24.43 h5febe37_6 conda-forge
gts 0.7.6 he42f4ea_4 conda-forge
gufe 1.5.0 pyhd8ed1ab_1 conda-forge
h11 0.16.0 pyhd8ed1ab_0 conda-forge
h2 4.3.0 pyhcf101f3_0 conda-forge
h5py 3.15.1 nompi_py313h7aa1c8b_100 conda-forge
harfbuzz 12.1.0 haf38c7b_0 conda-forge
hdf4 4.2.15 h2ee6834_7 conda-forge
hdf5 1.14.6 nompi_he65715a_103 conda-forge
hicolor-icon-theme 0.17 hce30654_2 conda-forge
hpack 4.1.0 pyhd8ed1ab_0 conda-forge
html5lib 1.1 pyhd8ed1ab_2 conda-forge
httpcore 1.0.9 pyh29332c3_0 conda-forge
httpx 0.28.1 pyhd8ed1ab_0 conda-forge
hyperframe 6.1.0 pyhd8ed1ab_0 conda-forge
icu 75.1 hfee45f7_0 conda-forge
idna 3.11 pyhd8ed1ab_0 conda-forge
imagesize 1.4.1 pyhd8ed1ab_0 conda-forge
importlib-metadata 8.7.0 pyhe01879c_1 conda-forge
importlib-resources 6.5.2 pyhd8ed1ab_0 conda-forge
importlib_resources 6.5.2 pyhd8ed1ab_0 conda-forge
iniconfig 2.3.0 pyhd8ed1ab_0 conda-forge
ipycytoscape 1.3.3 pyhd8ed1ab_1 conda-forge
ipykernel 7.1.0 pyh5552912_0 conda-forge
ipython 9.6.0 pyhfa0c392_0 conda-forge
ipython_pygments_lexers 1.1.1 pyhd8ed1ab_0 conda-forge
ipywidgets 8.1.7 pyhd8ed1ab_0 conda-forge
isodate 0.7.2 pyhd8ed1ab_1 conda-forge
isoduration 20.11.0 pyhd8ed1ab_1 conda-forge
jax 0.7.0 pyhd8ed1ab_0 conda-forge
jaxlib 0.7.0 cpu_py313h8fc57d6_1 conda-forge
jedi 0.19.2 pyhd8ed1ab_1 conda-forge
jinja2 3.1.6 pyhd8ed1ab_0 conda-forge
jmespath 1.0.1 pyhd8ed1ab_1 conda-forge
joblib 1.5.2 pyhd8ed1ab_0 conda-forge
json5 0.12.1 pyhd8ed1ab_0 conda-forge
jsonpointer 3.0.0 py313h8f79df9_2 conda-forge
jsonschema 4.25.1 pyhe01879c_0 conda-forge
jsonschema-specifications 2025.9.1 pyhcf101f3_0 conda-forge
jsonschema-with-format-nongpl 4.25.1 he01879c_0 conda-forge
jupyter-lsp 2.3.0 pyhcf101f3_0 conda-forge
jupyter_client 8.6.3 pyhd8ed1ab_1 conda-forge
jupyter_core 5.9.1 pyhc90fa1f_0 conda-forge
jupyter_events 0.12.0 pyh29332c3_0 conda-forge
jupyter_server 2.17.0 pyhcf101f3_0 conda-forge
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jupyterlab 4.4.10 pyhd8ed1ab_0 conda-forge
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jupyterlab_server 2.28.0 pyhcf101f3_0 conda-forge
jupyterlab_widgets 3.0.15 pyhd8ed1ab_0 conda-forge
kartograf 1.2.0 pyhd8ed1ab_0 conda-forge
khronos-opencl-icd-loader 2024.10.24 h5505292_1 conda-forge
kiwisolver 1.4.9 py313hf88c9ab_1 conda-forge
konnektor 0.2.0 pyhe01879c_0 conda-forge
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lark 1.3.0 pyhd8ed1ab_0 conda-forge
lcms2 2.17 h7eeda09_0 conda-forge
lerc 4.0.0 hd64df32_1 conda-forge
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libblas 3.9.0 37_h51639a9_openblas conda-forge
libboost 1.86.0 hf493ff8_4 conda-forge
libboost-python 1.86.0 py313h88230d1_4 conda-forge
libbrotlicommon 1.2.0 h87ba0bc_0 conda-forge
libbrotlidec 1.2.0 h95a88de_0 conda-forge
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libcblas 3.9.0 37_hb0561ab_openblas conda-forge
libcrc32c 1.1.2 hbdafb3b_0 conda-forge
libcurl 8.16.0 hdece5d2_0 conda-forge
libcxx 21.1.4 hf598326_0 conda-forge
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libedit 3.1.20250104 pl5321hafb1f1b_0 conda-forge
libev 4.33 h93a5062_2 conda-forge
libexpat 2.7.1 hec049ff_0 conda-forge
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libgd 2.3.3 hb2c3a21_11 conda-forge
libgfortran 15.2.0 hfcf01ff_1 conda-forge
libgfortran5 15.2.0 h742603c_1 conda-forge
libglib 2.86.0 he69a767_1 conda-forge
libgrpc 1.71.0 h857da87_1 conda-forge
libiconv 1.18 h23cfdf5_2 conda-forge
libintl 0.25.1 h493aca8_0 conda-forge
libjpeg-turbo 3.1.0 h5505292_0 conda-forge
liblapack 3.9.0 37_hd9741b5_openblas conda-forge
liblzma 5.8.1 h39f12f2_2 conda-forge
libmpdec 4.0.0 h5505292_0 conda-forge
libnetcdf 4.9.2 nompi_h2d3d5cf_118 conda-forge
libnghttp2 1.67.0 hc438710_0 conda-forge
libntlm 1.8 h5505292_0 conda-forge
libopenblas 0.3.30 openmp_ha158390_2 conda-forge
libpng 1.6.50 h280e0eb_1 conda-forge
libpq 18.0 h31f7a3a_0 conda-forge
libprotobuf 5.29.3 h6c9c1dd_2 conda-forge
librdkit 2025.09.1 hab8bf10_1 conda-forge
libre2-11 2025.06.26 hd41c47c_0 conda-forge
librsvg 2.58.4 h266df6f_3 conda-forge
libsodium 1.0.20 h99b78c6_0 conda-forge
libsqlite 3.50.4 h4237e3c_0 conda-forge
libssh2 1.11.1 h1590b86_0 conda-forge
libtiff 4.7.1 h7dc4979_0 conda-forge
libtorch 2.6.0 cpu_generic_hb48c3f1_2 conda-forge
libuv 1.51.0 h6caf38d_1 conda-forge
libwebp-base 1.6.0 h07db88b_0 conda-forge
libxcb 1.17.0 hdb1d25a_0 conda-forge
libxml2 2.13.8 h4a9ca0c_1 conda-forge
libxslt 1.1.43 h429d6fd_0 conda-forge
libzip 1.11.2 h1336266_0 conda-forge
libzlib 1.3.1 h8359307_2 conda-forge
lightning-utilities 0.15.2 pyhd8ed1ab_0 conda-forge
llvm-openmp 21.1.4 h4a912ad_0 conda-forge
llvmlite 0.45.1 py313he297ed2_0 conda-forge
locket 1.0.0 pyhd8ed1ab_0 conda-forge
lomap2 3.2.1 pyhd8ed1ab_3 conda-forge
lxml 6.0.2 py313he472ade_0 conda-forge
lz4 4.4.4 py313h975afc6_1 conda-forge
lz4-c 1.10.0 h286801f_1 conda-forge
markdown-it-py 4.0.0 pyhd8ed1ab_0 conda-forge
markupsafe 3.0.3 py313h7d74516_0 conda-forge
matplotlib-base 3.10.7 py313h58042b9_0 conda-forge
matplotlib-inline 0.2.1 pyhd8ed1ab_0 conda-forge
mda-xdrlib 0.2.0 pyhd8ed1ab_1 conda-forge
mdanalysis 2.10.0 py313h7d16b84_1 conda-forge
mdtraj 1.11.0 np2py313h2278ae6_3 conda-forge
mdurl 0.1.2 pyhd8ed1ab_1 conda-forge
mistune 3.1.4 pyhcf101f3_0 conda-forge
ml_dtypes 0.5.1 py313hd1f53c0_1 conda-forge
mmtf-python 1.1.3 pyhd8ed1ab_0 conda-forge
more-itertools 10.8.0 pyhd8ed1ab_0 conda-forge
mpc 1.3.1 h8f1351a_1 conda-forge
mpfr 4.2.1 hb693164_3 conda-forge
mpiplus v0.0.2 pyhd8ed1ab_0 conda-forge
mpmath 1.3.0 pyhd8ed1ab_1 conda-forge
mrcfile 1.5.4 pyhd8ed1ab_0 conda-forge
msgpack-python 1.1.2 py313ha61f8ec_0 conda-forge
multidict 6.6.3 py313h6347b5a_0 conda-forge
munkres 1.1.4 pyhd8ed1ab_1 conda-forge
mypy_extensions 1.1.0 pyha770c72_0 conda-forge
narwhals 2.10.0 pyhcf101f3_0 conda-forge
natsort 8.4.0 pyh29332c3_1 conda-forge
nbclient 0.10.2 pyhd8ed1ab_0 conda-forge
nbconvert-core 7.16.6 pyhcf101f3_1 conda-forge
nbformat 5.10.4 pyhd8ed1ab_1 conda-forge
ncurses 6.5 h5e97a16_3 conda-forge
nest-asyncio 1.6.0 pyhd8ed1ab_1 conda-forge
netcdf-fortran 4.6.2 nompi_h170865b_101 conda-forge
netcdf4 1.7.2 nompi_py313h6cfb18b_103 conda-forge
networkx 3.5 pyhe01879c_0 conda-forge
nomkl 1.0 h5ca1d4c_0 conda-forge
notebook 7.4.7 pyhd8ed1ab_0 conda-forge
notebook-shim 0.2.4 pyhd8ed1ab_1 conda-forge
numba 0.62.1 py313h936dde2_0 conda-forge
numexpr 2.14.1 py313h73ed539_0 conda-forge
numpy 2.2.6 py313h41a2e72_0 conda-forge
numpydoc 1.9.0 pyhe01879c_1 conda-forge
ocl_icd_wrapper_apple 1.0.0 h27ca646_0 conda-forge
opencl-headers 2025.06.13 h286801f_0 conda-forge
openfe-analysis 0.3.1 pyhd8ed1ab_0 conda-forge
openff-amber-ff-ports 2025.09.0 pyhd8ed1ab_0 conda-forge
openff-forcefields 2025.10.1 pyhd8ed1ab_0 conda-forge
openff-interchange 0.4.8 pyhd8ed1ab_1 conda-forge
openff-interchange-base 0.4.8 pyhd8ed1ab_1 conda-forge
openff-nagl 0.5.4 pyhd8ed1ab_0 conda-forge
openff-nagl-base 0.5.4 pyhd8ed1ab_0 conda-forge
openff-nagl-models 2025.9.0 pyhd8ed1ab_0 conda-forge
openff-toolkit 0.17.1 pyhd8ed1ab_0 conda-forge
openff-toolkit-base 0.17.1 pyhd8ed1ab_0 conda-forge
openff-units 0.3.1 pyhd8ed1ab_2 conda-forge
openff-utilities 0.1.16 pyhd8ed1ab_0 conda-forge
openjpeg 2.5.4 hbfb3c88_0 conda-forge
openldap 2.6.10 hbe55e7a_0 conda-forge
openmm 8.3.1 py313h4df8ecb_0_khronos conda-forge
openmmforcefields 0.15.0 pyhd8ed1ab_1 conda-forge
openmmtools 0.25.3 pyhd8ed1ab_0 conda-forge
openmoltools 0.8.8 pyhd8ed1ab_1 conda-forge
openssl 3.5.4 h5503f6c_0 conda-forge
opt_einsum 3.4.0 pyhd8ed1ab_1 conda-forge
optree 0.17.0 py313hc50a443_1 conda-forge
overrides 7.7.0 pyhd8ed1ab_1 conda-forge
packaging 25.0 pyh29332c3_1 conda-forge
pandas 2.3.3 py313h7d16b84_1 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
pango 1.56.4 h875632e_0 conda-forge
parmed 4.3.0 py313h70a7ac0_2 conda-forge
parso 0.8.5 pyhcf101f3_0 conda-forge
partd 1.4.2 pyhd8ed1ab_0 conda-forge
patsy 1.0.2 pyhcf101f3_0 conda-forge
pcre2 10.46 h7125dd6_0 conda-forge
pdbfixer 1.11 pyhd8ed1ab_0 conda-forge
perl 5.32.1 7_h4614cfb_perl5 conda-forge
perses 0.10.3 pyhecae5ae_1 conda-forge
pexpect 4.9.0 pyhd8ed1ab_1 conda-forge
pickleshare 0.7.5 pyhd8ed1ab_1004 conda-forge
pillow 11.3.0 py313he4c6d0d_3 conda-forge
pint 0.24.4 pyhe01879c_2 conda-forge
pip 25.2 pyh145f28c_0 conda-forge
pixman 0.46.4 h81086ad_1 conda-forge
platformdirs 4.5.0 pyhcf101f3_0 conda-forge
plotly 6.3.1 pyhd8ed1ab_0 conda-forge
plugcli 0.2.1 pyhd8ed1ab_0 conda-forge
pluggy 1.6.0 pyhd8ed1ab_0 conda-forge
pooch 1.8.2 pyhd8ed1ab_3 conda-forge
prometheus_client 0.23.1 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.52 pyha770c72_0 conda-forge
propcache 0.3.1 py313ha9b7d5b_0 conda-forge
proto-plus 1.26.1 pyhd8ed1ab_0 conda-forge
protobuf 5.29.3 py313hfa7305b_0 conda-forge
psutil 7.1.1 py313h6535dbc_0 conda-forge
pthread-stubs 0.4 hd74edd7_1002 conda-forge
ptyprocess 0.7.0 pyhd8ed1ab_1 conda-forge
pure_eval 0.2.3 pyhd8ed1ab_1 conda-forge
py-cpuinfo 9.0.0 pyhd8ed1ab_1 conda-forge
py3dmol 2.5.3 pyhd8ed1ab_0 conda-forge
pyasn1 0.6.1 pyhd8ed1ab_2 conda-forge
pyasn1-modules 0.4.2 pyhd8ed1ab_0 conda-forge
pybind11 3.0.1 pyh7a1b43c_0 conda-forge
pybind11-global 3.0.1 pyhc7ab6ef_0 conda-forge
pycairo 1.28.0 py313hfcf5df3_1 conda-forge
pycparser 2.22 pyh29332c3_1 conda-forge
pydantic 2.11.10 pyh3cfb1c2_0 conda-forge
pydantic-core 2.33.2 py313hf3ab51e_0 conda-forge
pydantic-settings 2.11.0 pyh3cfb1c2_0 conda-forge
pydata-sphinx-theme 0.16.1 pyhd8ed1ab_0 conda-forge
pyedr 0.8.0 pyhd8ed1ab_1 conda-forge
pygments 2.19.2 pyhd8ed1ab_0 conda-forge
pygraphviz 1.14 py313hbf151f7_2 conda-forge
pymbar 4.2.0 h39782a4_1 conda-forge
pymbar-core 4.2.0 py313hc577518_1 conda-forge
pyobjc-core 12.0 py313h40b429f_1 conda-forge
pyobjc-framework-cocoa 12.0 py313hcc5defa_1 conda-forge
pyopenssl 25.3.0 pyhd8ed1ab_0 conda-forge
pyparsing 3.2.5 pyhcf101f3_0 conda-forge
pysocks 1.7.1 pyha55dd90_7 conda-forge
pytables 3.10.2 py313h5ba8fac_9 conda-forge
pytest 8.4.2 pyhd8ed1ab_0 conda-forge
pytest-cov 7.0.0 pyhcf101f3_1 conda-forge
pytest-datadir 1.8.0 pyhd8ed1ab_0 conda-forge
pytest-regressions 2.8.3 pyhc455866_0 conda-forge
pytest-rerunfailures 16.1 pyhd8ed1ab_0 conda-forge
pytest-xdist 3.8.0 pyhd8ed1ab_0 conda-forge
python 3.13.9 hfc2f54d_101_cp313 conda-forge
python-constraint 1.4.0 pyhff2d567_1 conda-forge
python-dateutil 2.9.0.post0 pyhe01879c_2 conda-forge
python-dotenv 1.2.1 pyhcf101f3_0 conda-forge
python-fastjsonschema 2.21.2 pyhe01879c_0 conda-forge
python-gil 3.13.9 h4df99d1_101 conda-forge
python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge
python-tzdata 2025.2 pyhd8ed1ab_0 conda-forge
python_abi 3.13 8_cp313 conda-forge
pytng 0.3.4 py313hf951d8b_0 conda-forge
pytorch 2.6.0 cpu_generic_py313_h386d6f0_2 conda-forge
pytorch-lightning 2.5.5 pyh2a12c56_0 conda-forge
pytz 2025.2 pyhd8ed1ab_0 conda-forge
pyu2f 0.1.5 pyhd8ed1ab_1 conda-forge
pyyaml 6.0.3 py313h7d74516_0 conda-forge
pyzmq 27.1.0 py312hd65ceae_0 conda-forge
qhull 2020.2 h420ef59_5 conda-forge
rdkit 2025.09.1 py313h7d9923d_1 conda-forge
re2 2025.06.26 h6589ca4_0 conda-forge
readline 8.2 h1d1bf99_2 conda-forge
referencing 0.37.0 pyhcf101f3_0 conda-forge
reportlab 4.4.4 py313h6535dbc_0 conda-forge
requests 2.32.5 pyhd8ed1ab_0 conda-forge
rfc3339-validator 0.1.4 pyhd8ed1ab_1 conda-forge
rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge
rfc3987-syntax 1.1.0 pyhe01879c_1 conda-forge
rich 14.2.0 pyhcf101f3_0 conda-forge
rlpycairo 0.4.0 pyh6c17108_0 conda-forge
roman-numerals-py 3.1.0 pyhd8ed1ab_0 conda-forge
rpds-py 0.28.0 py313h2c089d5_1 conda-forge
rsa 4.9.1 pyhd8ed1ab_0 conda-forge
ruamel.yaml 0.18.16 py313h6535dbc_0 conda-forge
ruamel.yaml.clib 0.2.14 py313h6535dbc_0 conda-forge
s3transfer 0.14.0 pyhd8ed1ab_0 conda-forge
scikit-learn 1.7.2 py313h6eea1c5_0 conda-forge
scikit-mol 0.6.1 pyhd8ed1ab_0 conda-forge
scipy 1.16.2 py313h0d10b07_0 conda-forge
seaborn 0.13.2 hd8ed1ab_3 conda-forge
seaborn-base 0.13.2 pyhd8ed1ab_3 conda-forge
send2trash 1.8.3 pyh31c8845_1 conda-forge
setuptools 80.9.0 pyhff2d567_0 conda-forge
six 1.17.0 pyhe01879c_1 conda-forge
sleef 3.9.0 hb028509_0 conda-forge
snappy 1.2.2 hd121638_0 conda-forge
sniffio 1.3.1 pyhd8ed1ab_1 conda-forge
snowballstemmer 3.0.1 pyhd8ed1ab_0 conda-forge
sortedcontainers 2.4.0 pyhd8ed1ab_1 conda-forge
soupsieve 2.8 pyhd8ed1ab_0 conda-forge
spectate 1.0.1 pyhd8ed1ab_0 conda-forge
sphinx 8.2.3 pyhd8ed1ab_0 conda-forge
sphinx-autodoc-typehints 3.5.2 pyhd8ed1ab_0 conda-forge
sphinx-click 6.1.0 pyhd8ed1ab_0 conda-forge
sphinx-jinja2-compat 0.4.1 pyhd8ed1ab_0 conda-forge
sphinx-prompt 1.10.1 pyhd8ed1ab_0 conda-forge
sphinx-tabs 3.4.1 pyhd8ed1ab_1 conda-forge
sphinx-toolbox 4.0.0 pyhd8ed1ab_0 conda-forge
sphinxcontrib-applehelp 2.0.0 pyhd8ed1ab_1 conda-forge
sphinxcontrib-devhelp 2.0.0 pyhd8ed1ab_1 conda-forge
sphinxcontrib-htmlhelp 2.1.0 pyhd8ed1ab_1 conda-forge
sphinxcontrib-jsmath 1.0.1 pyhd8ed1ab_1 conda-forge
sphinxcontrib-qthelp 2.0.0 pyhd8ed1ab_1 conda-forge
sphinxcontrib-serializinghtml 1.1.10 pyhd8ed1ab_1 conda-forge
sqlalchemy 2.0.44 py313h6535dbc_0 conda-forge
stack_data 0.6.3 pyhd8ed1ab_1 conda-forge
statsmodels 0.14.5 py313hc577518_1 conda-forge
sympy 1.14.0 pyh2585a3b_105 conda-forge
tabulate 0.9.0 pyhd8ed1ab_2 conda-forge
tblib 3.1.0 pyhd8ed1ab_0 conda-forge
termcolor 3.2.0 pyhd8ed1ab_0 conda-forge
terminado 0.18.1 pyh31c8845_0 conda-forge
threadpoolctl 3.6.0 pyhecae5ae_0 conda-forge
tidynamics 1.1.2 pyhd8ed1ab_0 conda-forge
tinycss2 1.4.0 pyhd8ed1ab_0 conda-forge
tinydb 4.8.2 pyhd8ed1ab_1 conda-forge
tk 8.6.13 h892fb3f_2 conda-forge
tomli 2.3.0 pyhcf101f3_0 conda-forge
toolz 1.1.0 pyhd8ed1ab_1 conda-forge
torchmetrics 1.8.2 pyhd8ed1ab_0 conda-forge
tornado 6.5.2 py313hcdf3177_1 conda-forge
tqdm 4.67.1 pyhd8ed1ab_1 conda-forge
traitlets 5.14.3 pyhd8ed1ab_1 conda-forge
typing-extensions 4.15.0 h396c80c_0 conda-forge
typing-inspection 0.4.2 pyhd8ed1ab_0 conda-forge
typing_extensions 4.15.0 pyhcf101f3_0 conda-forge
typing_inspect 0.9.0 pyhd8ed1ab_1 conda-forge
typing_utils 0.1.0 pyhd8ed1ab_1 conda-forge
tzdata 2025b h78e105d_0 conda-forge
uri-template 1.3.0 pyhd8ed1ab_1 conda-forge
urllib3 2.5.0 pyhd8ed1ab_0 conda-forge
validators 0.35.0 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.14 pyhd8ed1ab_0 conda-forge
webcolors 24.11.1 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 pyhd8ed1ab_3 conda-forge
websocket-client 1.9.0 pyhd8ed1ab_0 conda-forge
widgetsnbextension 4.0.14 pyhd8ed1ab_0 conda-forge
xmltodict 1.0.2 pyhcf101f3_0 conda-forge
xorg-libice 1.1.2 h5505292_0 conda-forge
xorg-libsm 1.2.6 h5505292_0 conda-forge
xorg-libx11 1.8.12 h6a5fb8c_0 conda-forge
xorg-libxau 1.0.12 h5505292_0 conda-forge
xorg-libxdmcp 1.1.5 hd74edd7_0 conda-forge
xorg-libxext 1.3.6 hd74edd7_0 conda-forge
xorg-libxt 1.3.1 h5505292_0 conda-forge
yaml 0.2.5 h925e9cb_3 conda-forge
yarl 1.22.0 py313h7d74516_0 conda-forge
zeromq 4.3.5 h888dc83_9 conda-forge
zict 3.0.0 pyhd8ed1ab_1 conda-forge
zipp 3.23.0 pyhd8ed1ab_0 conda-forge
zlib 1.3.1 h8359307_2 conda-forge
zlib-ng 2.2.5 hf787086_0 conda-forge
zstandard 0.25.0 py313h9734d34_0 conda-forge
zstd 1.5.7 h6491c7d_2 conda-forge
Output
ImportError while loading conftest '/Users/ethan/Documents/work/openfe/openfe/openfe/tests/conftest.py'.
openfe/__init__.py:18: in <module>
from gufe import (
../../../../micromamba/envs/openfe_env/lib/python3.13/site-packages/gufe/__init__.py:6: in <module>
from . import tokenization, visualization
../../../../micromamba/envs/openfe_env/lib/python3.13/site-packages/gufe/tokenization.py:24: in <module>
from gufe.serialization.json import (
../../../../micromamba/envs/openfe_env/lib/python3.13/site-packages/gufe/serialization/json.py:18: in <module>
from openff.units import DEFAULT_UNIT_REGISTRY
E ImportError: cannot import name 'DEFAULT_UNIT_REGISTRY' from 'openff.units' (/Users/ethan/micromamba/envs/openfe_env/lib/python3.13/site-packages/openff/units/__init__.py)Expected behavior
I would expect to just be able to run the single file I want especially considering I am not relying on the code listed.
Additional context
n/a