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18 changes: 9 additions & 9 deletions docs/tutorials/index.rst
Original file line number Diff line number Diff line change
Expand Up @@ -9,12 +9,6 @@ OpenFE has several tutorial notebooks which are maintained on our
Here is a list of key tutorials which cover the different aspects of the
OpenFE tooling:

Generating Partial Charges
--------------------------

The :ref:`Generating Partial Charges CLI tutorial <charge_molecules_cli_tutorial>` demonstrates
how the command line interface can be used to assign and store partial charges for small molecules which
can be used throughout the OpenFE ecosystem.

Relative Free Energies
----------------------
Expand Down Expand Up @@ -47,6 +41,12 @@ The :any:`Absolute Solvation Free Energy Protocol <ahfe_tutorial>` tutorial
walks users through how to calculate the hydration free energy of a benzene
ligand.

Generating Partial Charges
--------------------------

The :ref:`Generating Partial Charges CLI tutorial <charge_molecules_cli_tutorial>` demonstrates
how the command line interface can be used to assign and store partial charges for small molecules which
can be used throughout the OpenFE ecosystem.

Molecular Dynamics (MD)
-----------------------
Expand All @@ -73,10 +73,10 @@ and plot networks of relative free energy results.
:maxdepth: 1
:hidden:

charge_molecules_cli_tutorial
showcase_notebook
rbfe_cli_tutorial
rbfe_python_tutorial
showcase_notebook
md_tutorial
ahfe_tutorial
charge_molecules_cli_tutorial
md_tutorial
plotting_with_cinnabar