OpenFreeEnergy · atravitz · Apr 3, 2025 · Apr 1, 2025 · Apr 1, 2025
diff --git a/docs/cookbook/index.rst b/docs/cookbook/index.rst
@@ -160,7 +160,6 @@ List of Cookbooks
     hand_write_ligand_network
     ligandnetwork_vis
     create_alchemical_network
-    under_the_hood
     user_charges
     bespoke_parameters
 

diff --git a/docs/environment.yaml b/docs/environment.yaml
@@ -16,6 +16,7 @@ dependencies:
 - openff-units
 - openmm
 - packaging
+- pip
 - plugcli
 - python=3.10
 - sphinx <7.3

diff --git a/docs/guide/index.rst b/docs/guide/index.rst
@@ -9,4 +9,5 @@ User Guide
     results/index
     cli/index
     protocols/index
+    under_the_hood
     troubleshooting
diff --git a/docs/guide/introduction.rst b/docs/guide/introduction.rst
@@ -43,6 +43,8 @@ calculate that :math:`\Delta G`.
 The :ref:`gather results <userguide_results>` stage aggregates the individual results for further analysis. For example, the CLI's ``gather`` command will create a
 table of the :math:`\Delta G` for each leg.
 
+For more workflow details, see :ref:`under-the-hood`.
+
 .. TODO: Should the CLI workflow be moved to under "CLI Interface"?
 
 CLI Workflow

diff --git a/docs/cookbook/under_the_hood.rst → docs/guide/under_the_hood.rst b/docs/cookbook/under_the_hood.rst → docs/guide/under_the_hood.rst