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@IAlibay IAlibay commented May 23, 2025

I'm cherry picking small changes to the ABFE PR to make it a lot easier to deal with / work out what remains to be tested.

This change purely affects how the base unit defines how we fetch OpenMM topology/system objects. It's mostly a convenience update but makes downstream classes a lot simpler.

Checklist

  • Added a news entry -- this is an internal API thing, no news is required.

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codecov bot commented May 23, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 92.73%. Comparing base (23218d5) to head (14d5633).
⚠️ Report is 266 commits behind head on main.

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #1289   +/-   ##
=======================================
  Coverage   92.73%   92.73%           
=======================================
  Files         141      141           
  Lines       10860    10860           
=======================================
  Hits        10071    10071           
  Misses        789      789           
Flag Coverage Δ
fast-tests 92.73% <100.00%> (ø)

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No API break detected ✅

@IAlibay IAlibay enabled auto-merge May 23, 2025 14:22
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lgtm! just a typo

system : openmm.System
An OpenMM System of the alchemical system.
positionns : openmm.unit.Quantity
An non-alchemical OpenMM System of the simulated system.
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Suggested change
An non-alchemical OpenMM System of the simulated system.
A non-alchemical OpenMM System of the simulated system.

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Oops auto-merge did itself before I got to merge this.

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Will add it in the next PR.

@IAlibay IAlibay merged commit 9626bbf into main May 23, 2025
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@IAlibay IAlibay deleted the afe_base_update branch May 23, 2025 14:34
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4 participants