OpenKnowledgeMaps · pkraker · Apr 9, 2020 · Mar 3, 2020 · Mar 3, 2020 · Mar 3, 2020
diff --git a/.gitignore b/.gitignore
@@ -12,3 +12,9 @@ vis/stylesheets/*.css
 dist/
 .idea/
 config.js
+*__pycache__*
+.pytest_cache
+.cache
+.Rhistory
+.ipynb_checkpoints
+.Rprofile
diff --git a/docker-compose.yml b/docker-compose.yml
@@ -0,0 +1,54 @@
+version: '3.7'
+
+services:
+
+  api:
+   build:
+     context: server
+     dockerfile: services.docker
+   restart: always
+   ports:
+    - '5001:5001'
+   depends_on:
+    - redis
+   network_mode: "host"
+
+  redis:
+    image: 'redis:4.0-alpine'
+    restart: always
+    command: ["redis-server", "/etc/redis/redis.conf", "--appendonly", "yes"]
+    volumes:
+       - 'redis:/var/lib/redis/data'
+       - ./server/workers/redis.conf:/etc/redis/redis.conf
+    restart: always
+    ports:
+      - '6379:6379'
+    network_mode: "host"
+
+  search_triple:
+    build:
+      context: server
+      dockerfile: search_triple.docker
+    env_file:
+      - server/workers/triple/triple.env
+    restart: always
+    network_mode: "host"
+
+  dataprocessing:
+    build:
+      context: server
+      dockerfile: dataprocessing.docker
+    env_file:
+      - server/workers/dataprocessing/dataprocessing.env
+    restart: always
+    network_mode: "host"
+    volumes:
+      - type: bind
+        source: /var/opt/renv
+        target: /root/.local/share/renv
+      - type: bind
+        source: /var/log/headstart
+        target: /var/log/headstart
+
+volumes:
+  redis:
diff --git a/docker-compose_win.yml b/docker-compose_win.yml
@@ -0,0 +1,42 @@
+version: '3.7'
+
+services:
+
+  api:
+    build:
+      context: server
+      dockerfile: services.docker
+    restart: always
+    ports:
+      - '127.0.0.1:5001:5001'
+    depends_on:
+      - redis
+
+  redis:
+    image: 'redis:4.0-alpine'
+    restart: always
+    command: ["redis-server", "/etc/redis/redis.conf", "--appendonly", "yes"]
+    volumes:
+      - ./server/workers/redis.conf:/etc/redis/redis.conf
+    restart: always
+    ports:
+      - '127.0.0.1:6379:6379'
+
+  search_triple:
+    build:
+      context: server
+      dockerfile: search_triple.docker
+    env_file:
+      - server/workers/triple/triple.env
+    restart: always
+
+  dataprocessing:
+    build:
+      context: server
+      dockerfile: dataprocessing.docker
+    env_file:
+      - server/workers/dataprocessing/dataprocessing.env
+    restart: always
+
+volumes:
+  redis:
diff --git a/examples/triple/README.md b/examples/triple/README.md
diff --git a/examples/triple/data-config_server.js b/examples/triple/data-config_server.js
@@ -0,0 +1 @@
+data_config.server_url = window.location.href.replace(/[^/]*$/, '') + "../../server/";
diff --git a/examples/triple/data-config_triple.js b/examples/triple/data-config_triple.js
@@ -0,0 +1,32 @@
+var data_config = {
+    tag: "visualization",
+    mode: "search_repos",
+
+    service: "triple",
+
+    title: "",
+    base_unit: "citations",
+    use_area_uri: true,
+    show_multiples: false,
+    show_dropdown: false,
+    preview_type: "pdf",
+    sort_options: ["relevance", "title", "authors", "year"],
+    is_force_areas: true,
+    language: "eng_pubmed",
+    area_force_alpha: 0.015,
+    show_list: true,
+    content_based: true,
+    url_prefix: "",
+
+    show_context: true,
+    create_title_from_context: true,
+    context_most_relevant_tooltip: true,
+
+    doi_outlink: true,
+    filter_menu_dropdown: true,
+    sort_menu_dropdown: true,
+    filter_options: ["all", "open_access"],
+
+    embed_modal: true,
+    share_modal: false,
+};
diff --git a/examples/triple/headstart.php b/examples/triple/headstart.php
@@ -0,0 +1,28 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html>
+    <head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+    </head>
+
+    <body style="margin:0px; padding:0px">
+
+        <div id="visualization"></div>
+        <script type="text/javascript" src="data-config_<?php echo $_GET['service'] ?>.js"></script>
+        <script type="text/javascript" src="data-config_server.js"></script>
+        <script type="text/javascript" src="search_options.js"></script>
+        <script>
+            data_config.title = '<?php echo 'Overview of <span id="search-term-unique">' . $_GET['query'] . '</span>'; ?>';
+        	data_config.files = [{
+        		title: <?php echo json_encode($_GET['query']) ?>,
+        		file: <?php echo json_encode($_GET['file']) ?>
+        	}];
+                data_config.options = options_<?php echo $_GET['service'] ?>.dropdowns;
+        </script>
+        <script type="text/javascript" src="../../dist/headstart.js"></script>
+        <link type="text/css" rel="stylesheet" href="../../dist/headstart.css"></link>
+        <script type="text/javascript">
+            headstart.start();
+        </script>
+         <div style="margin-top:20px">Built with <a href="http://github.com/OpenKnowledgeMaps/Headstart" target="_blank">Headstart</a> and <a href="http://github.com/ropensci/rplos" target="_blank">rplos</a>. All content retrieved from <a href="https://www.gotriple.eu/" target="_blank ">TRIPLE</a>.
+        </div>
+    </body>
+</html>
diff --git a/examples/triple/options.css b/examples/triple/options.css
@@ -0,0 +1,127 @@
+* {
+    box-sizing: content-box;
+}
+
+.divity {
+    display: inline-block;
+}
+
+.frontend-hidden {
+    display: none;
+}
+
+.visible {
+    display: block;
+}
+
+label {
+    display: inline;
+    font-weight: normal;
+}
+
+#filter-container {
+    margin-top: 15px;
+}
+
+#filter-btn {
+    margin-bottom: 23px;
+    margin-right: 20px;
+    margin-top: 5px;
+}
+
+#filters {
+    margin-bottom: 10px;
+}
+
+#stats {
+    margin-bottom: 30px;
+    margin-top: 30px;
+}
+
+.dropdown {
+    padding: 5px;
+}
+
+.frontend-btn {
+  -webkit-border-radius: 5;
+  -moz-border-radius: 5;
+  border-radius: 5px;
+  color: #636363;
+  font-size: 12px;
+  background: #ffffff;
+  padding: 8px 10px 8px 10px;
+  text-decoration: none;
+  border: solid #636363 1px;
+}
+
+.frontend-btn:hover {
+  background: #f5f2f5;
+  /*background-image: -webkit-linear-gradient(top, #f5f2f5, #c9c9c9);
+  background-image: -moz-linear-gradient(top, #f5f2f5, #c9c9c9);
+  background-image: -ms-linear-gradient(top, #f5f2f5, #c9c9c9);
+  background-image: -o-linear-gradient(top, #f5f2f5, #c9c9c9);
+  background-image: linear-gradient(to bottom, #f5f2f5, #c9c9c9);*/
+  text-decoration: none;
+}
+
+.div {
+    display: block; 
+}
+
+.hidden {
+    display: none;
+}
+
+.visible {
+    display: block;
+}
+
+#input-container {
+    margin-bottom: 30px;
+}
+
+.submit-btn {
+    padding: 3px 12px;
+}
+
+.caret {
+    border-left: 1px solid #AAA;
+    border-radius: 0px 4px 4px 0px;
+    background: #CCC linear-gradient(to top, #CCC 0%, #EEE 60%) repeat scroll 0% 0%;
+}
+
+.multiselect {
+    background-color: #fff;
+    /*background-image: -webkit-gradient(linear, left bottom, left top, color-stop(0, #eee), color-stop(0.5, #fff));
+    background-image: -webkit-linear-gradient(center bottom, #eee 0%, #fff 50%);
+    background-image: -moz-linear-gradient(center bottom, #eee 0%, #fff 50%);
+    filter: progid:DXImageTransform.Microsoft.gradient(startColorstr = '#ffffff', endColorstr = '#eeeeee', GradientType = 0);
+    background-image: linear-gradient(to top, #eee 0%, #fff 50%);*/
+
+    height: 18px
+}
+
+.btn-group {
+    margin-right: 30px;
+}
+
+.submit-btn {
+    display: inline-block;
+    padding-top: 10px;
+    margin-left: 20px;
+}
+
+#download {
+   margin-top: 510px;
+   margin-left: 30px;
+}
+
+.input_items {
+    display: inline-block;
+    vertical-align: middle;
+}
+
+.btn {
+    margin-left: 10px;
+    width: 100px;
+}
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		data_config.server_url = window.location.href.replace(/[^/]*$/, '') + "../../server/";