Add downloads page

docs/downloads.md

@@ -0,0 +1,47 @@
+Downloads
+========
+
+Download OpenMS installers, workflows, and other resources.
+
+# OpenMS installers
+
+| Platform | Name | SHA256 Hash |
+|----------|------|-------------|
+| Windows   | [OpenMS-2.8.0-Win64.exe](https://abibuilder.informatik.uni-tuebingen.de/archive/openms/OpenMSInstaller/release/2.8.0/OpenMS-2.8.0-Win64.exe) | `d203985c7042b885ac1085c30a2d9f36d7609b47`|
+| macOS | [OpenMS-2.8.0-macOS.dmg](https://abibuilder.informatik.uni-tuebingen.de/archive/openms/OpenMSInstaller/release/2.8.0/OpenMS-2.8.0-macOS.dmg) | `d203985c7042b885ac1085c30a2d9f36d7609b47` |
+| GNU/Linux | [OpenMS-2.8.0-Debian-Linux-x86_64.deb](https://abibuilder.informatik.uni-tuebingen.de/archive/openms/OpenMSInstaller/release/2.8.0/OpenMS-2.8.0-Debian-Linux-x86_64.deb) | `d203985c7042b885ac1085c30a2d9f36d7609b47` |
+| Source | [OpenMS-2.8.0-src.tar.gz](https://abibuilder.informatik.uni-tuebingen.de/archive/openms/OpenMSInstaller/release/2.8.0/OpenMS-2.8.0-src.tar.gz) | `d203985c7042b885ac1085c30a2d9f36d7609b47` |
+
+
+# Workflows
+
+| Workflow | Description | Download Link |
+|----------|-------------|---------------|
+|ProteomicsLFQ_tool_and_MSstats_postprocessing | Label-free identification and quantification using the comet search engine, the ProteomicsLFQ tool and statistical down-stream processing using MSstats. Compared to the other proteomics LFQ workflows, it is less complex as it combines quantification and inference steps in a single ProtemicLFQ tool. | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/ProteomicsLFQ_tool_and_MSstats_postprocessing.knwf?raw=true) |
+| basic_peptide_identification | Label-free identification using the omssa search engine. | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/basic_peptide_identification.knwf?raw=true) |
+| DIAMetAlyzer | Metabolomics assay library construction with decoy generation from DDA data and targeted DIA analysis using OpenSWATH and pyprophet for statistical validation. | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/DIAMetAlyzer.knwf?raw=true) |
+| Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT | Identification and quantification for isobaric experiments using MSGFPlus as search engine, epifany for inference and MSstatsTMT for statistical down-stream analysis. | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT.knwf?raw=true) |
+| labelfree_with_protein_quantification | Label-free with protein quantification steps implemented using individual OpenMS tools | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/labelfree_with_protein_quantification.knwf?raw=true) |
+| Metabolite_Adduct_Grouping | Quantification and identification via accurate mass based on multiple adduct grouping steps (adducts, neutral losses). | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/Metabolite_Adduct_Grouping.knwf?raw=true) |
+| Metabolite_DeNovoID | Quantification and identification via adduct grouping and de-novo identification using SIRIUS/CSI:FingerID. | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/Metabolite_DeNovoID.knwf?raw=true) |
+| Metabolite_ID | Quantification and identification via accurate mass based with downstream processing and visualisation. | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/Metabolite_ID.knwf?raw=true) |
+| Metabolite_SpectralID | Identification via spectral library search for small molecules. | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/Metabolite_SpectralID.knwf?raw=true) |
+| MSstats_statPostProcessing_iPRG2015 | Post processing workflow for using MSstats based on "Example_OneTool_ProteomicsLFQ_MSstats.knwf" | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/MSstats_statPostProcessing_iPRG2015.knwf?raw=true) |
+| MSstatsTMT | Post processing workflow for using MSstatsTMT based on "Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT". | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/MSstatsTMT.knwf?raw=true) |
+| OpenSWATH | Targeted extraction and scoring of transitions in DIA data based on an (iRT) assay library. | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/OpenSWATH.knwf?raw=true) |
+| Phosphoproteomics_ID | Identification of Phosphorilation sites. | [Download](https://github.com/OpenMS/Tutorials/blob/master/Workflows/Phosphoproteomics_ID.knwf?raw=true) |
+
+# OpenMS Releases
+
+| Release |  Installers |
+|---------|-------------|
+| Stable release | [Archive Link](https://abibuilder.informatik.uni-tuebingen.de/archive/openms/OpenMSInstaller/release/) |
+| RC release | [Archive Link](https://abibuilder.informatik.uni-tuebingen.de/archive/openms/OpenMSInstaller/RC/) |
+| Nightly release | [Archive Link](https://abibuilder.informatik.uni-tuebingen.de/archive/openms/OpenMSInstaller/nightly/) |
+
+# Other Resources
+
+| Name | Description | Download Link |
+|------|-------------|---------------|
+| Schemas | Documented schemas of the OpenMS formats | [Download](https://github.com/OpenMS/OpenMS/tree/develop/share/OpenMS/SCHEMAS)|
+| iPRG2016 data | Dataset mxMLs, Fasta database, Identification file (idXML), Big Data (idXML) | [Download](https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Tutorials/Data/iPRG2016/) |

docs/index.rst

@@ -62,6 +62,11 @@ Contents
 
    topp/topp.md
 
+.. toctree::
+   :maxdepth: 2
+   :caption: Downloads
+
+   downloads.md
 
 .. toctree::
    :maxdepth: 2