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Describe the change

Make test branch ready for staging branch freeze.

Ref: #4 (comment).

PR checklist

trickyck and others added 16 commits May 24, 2022 16:07
…ts (#33)

* made changes to several files

* formatted text with backticks and bold

* add internal link within the page to quality-control.md

* removed backticks from Qt and related software
* Fixes: review comments by @greengypsy

* review fixes

and add a few links to tutorials
* added keyboard syntax plus other minor changes such as adding full stops to sentences

* added spaces between symbols as discussed

Co-authored-by: Tapasweni Pathak <tapaswenipathak@gmail.com>
* added one note to installation on gnu linux md file

* added one note to installation on gnu linux md file

* added admonitions to noted text

* changed admonition types as discussed in review
* Add introduction of a few concepts

Fixes #14.

* Fixes: review comments by @greengypsy

* Fixes: review comments by @jpfeuffer

* Update docs/introduction.md

Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>

* Update docs/introduction.md

Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>

* Update docs/introduction.md

Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>

* Update docs/introduction.md

Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>

* delete: redundant note

Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>
* created About.rst

* linked Developer FAQ to external website

* linked Developer FAQ to external website

* linked Developer FAQ to external website

* fix links in About.rst

* Update About.rst

* Update About.rst

* Update About.rst

* changed About.rst to about.rst

* Rename About.rst to about.rst

* added known-issues.rst

* fix bullet point in known-rst

* add code to known-issues.rst

* add code to known-issues.rst

* fix code to known-issues.rst

* added VS output to known-issues.rst

* added VS output to known-issues.rst

* added VS output to known-issues.rst

* added VS output to known-issues.rst

* added VS output to known-issues.rst

* added more text to known-issues.rst

* tried adding console code to known-issues.rst

* completed copying content for  known-issues.rst

* added topp-faq.rst and docutils.conf

* changed contents title in topp-faq.rst

* inline cpp class in topp-faq.rst

* FileInfo is not a cpp class its a tool

* adding console code

* adding console code

* adding console code

* add monospace text to topp-faq.rst

* fixed code blocks

* created about contact for-developers for-users reporting-bugs-issues rst files

* created developer-faq.rst

* developer-faq changes

* developer-faq changes

* developer-faq changes

* developer-faq changes

* testing

* developer-faq

* developer-faq

* developer-faq

* developer-faq

* developer-faq

* developer-faq

* developer-faq

* minor change

* renamed folder to lower case

* made small changes to files and created 3 empty .md files

* added pyopenmswrapping classes link

* removed about.rst and added about.md

* added contact.md

* created for-developers.md

* modified for-developers.md

* created building-openms.md

* just checking links in contact.md

* added contributor quickstart guide, users quick start guide and reporting bugs and issues md files

* added linkstobs to flag dead links

* fixed some links and deleted for-developers.md

* modified about.md, deleted building-openms.md, created build-openms-from-source.md, developer-faq.md

* modified quickstart guide contributors, developer faq, reporting bugs, and user quick start guide

* added coding convents and write and label github issues md files, edited several others

* added Notes to developer-faq.md plus other minor edits

* added contributor-faq

* added coding-convetions.md

* added contributor-faq.md

* updated pull request checklist md file

* updated write-and-label-github-issues

* made changes suggested in the review

* updated folder structure as suggested in review

* added installations folder with build-openms-from-source.md as discussed

* created openms-git-workflow.md and click-fork.png under new directories additional-resources and images

* minor changes

* fix spacing issues

* fix alignment issues

* Add a few more from #4

* Fixes: review comments by @jpfeuffer

Co-authored-by: greengypsy <ckumar073@gmail.com>
Co-authored-by: greengypsy <31978630+greengypsy@users.noreply.github.com>
* modified conf.py and requirements.txt to include pygments code

* added lexers to code in several files
* Add: Adding your own tool to the TOPP suite

* Add: writing and shipping external code using openms

* Add: Compiling with self built compilers and non default standard libraries

* Add: wiki: Build your own OpenMS KNIME package

* Add: wiki: OpenMS-2.0-kernel-whitepaper

* Add: wiki: Developer Guidelines for adding new dependent libraries
* Add: build-openms-from-source in sidebar menu

* let's make everything work on staging-openms, too

* reduce: sidebar menu under introduction

* reduce: sidebar menu list

* Add: a few sections in sidebar menu of topp tut

* Add tabs for installations using installers

Fixes #17.

* minor fixes + cleanup

* add Discord invite link

* Update docs/tutorials/TOPP/quality-control.md

Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>

Co-authored-by: Julianus Pfeuffer <pfeuffer@informatik.uni-tuebingen.de>
* fix: follow Sentence case for h2 or less

* fix: glossary terms in introduction page

* add tabs: ux

* fix: follow Title Case and reword

* add: description plus file name

* fix: dropdown menu sidebar toppas tut

* add: +reword .github templates

* add: more glossary

* fix: include faq

* add: glossary more
@tapaswenipathak tapaswenipathak merged commit f0402bd into test May 29, 2022
@tapaswenipathak tapaswenipathak deleted the staging-freeze branch May 29, 2022 18:14
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4 participants