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keep omex file #104

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Merged
stellaprins merged 1 commit into from
Dec 12, 2024
Merged

keep omex file #104

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9 changes: 0 additions & 9 deletions utils/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -647,9 +647,6 @@ def run_biosimulators_remote(engine,sedml_filepath,sbml_filepath):
print(f"There was an error submitting the simulation archive:{exception_message}")
results_urls = {"response":"","view": "", "download": "", "logs": "","exception": exception_message}

if os.path.exists(omex_filepath):
os.remove(omex_filepath)

return results_urls

def get_remote_results(engine, download_link, output_dir='remote_results'):
Expand Down Expand Up @@ -711,9 +708,6 @@ def run_biosimulators_docker(engine,sedml_filepath,sbml_filepath,output_dir='out
detailed_error_log_dict['status'] = 'FAIL'
detailed_error_log_dict['error_message'] = "Runtime Exception"

if os.path.exists(omex_filepath):
os.remove(omex_filepath)

return {"exception_message":exception_message,"log_yml":log_yml_dict, "detailed_error_log":detailed_error_log_dict}

def biosimulators_core(engine,omex_filepath,output_dir=None):
Expand Down Expand Up @@ -749,9 +743,6 @@ def biosimulators_core(engine,omex_filepath,output_dir=None):
mounts=[mount_in,mount_out],
command=f"-i '/root/in/{omex_file}' -o /root/out",
auto_remove=True)

if os.path.exists(omex_filepath_no_spaces):
os.remove(omex_filepath_no_spaces)

def test_engine(engine,filename,error_categories=error_categories):
'''
Expand Down