Merged
Conversation
* Draft add remote outcomes Copasi and Tellurium to BioModels README table * adjustments to remote test handling in parse_biomodels.py * fix error handling in run_biosimulators_remotely * use utf-8 encoding when writing files in parse_biomodels and update README table with remote tellurium and copasi results
* update d1 plots for biomodels tables * update results using original SED-ML files
…olumns, batch remote submissions, enable pickling, skip native tellurium float errors, etc) (#114)
* add omex_file_name to remote simulation dictionary instead of generic 'test' * set use_original_files to False to use ammended sedml files and remove unnecessary comment * adjust sedml files to replicate curated BioModels figures * add created omex files * update detailed biomodels tables and d1 plots * make results table names more descriptive
* add egg info to gitignore * remove commented out code * draft readme * bugfix level_version tag process_test_suite * remove BIOMD files that should not be there * update READMEs * bugfix command line options overrule main script * pre-commit comment for developers * add back BIOMD models, they are needed in validate all sh * add forward slashes in filepaths, fix typos
Minor changes to readme and tests
* master: Update README.md
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.