Release/v1.10.0#3721

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robkooper wants to merge 1553 commits intomainfrom

release/v1.10.0

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Commits on Oct 15, 2025

Commits on Oct 16, 2025

add jsonlite suggests to data.land
dlebauer
committed
Bug fix.
Dongchen Zhang
committed
use system.file for test fixtures
dlebauer
committed
Revert change.
Dongchen Zhang
committed
Revert change.
Dongchen Zhang
committed
Apply suggestions from code review
infotroph
authored
Update base/db/R/convert_input.R
infotroph
authored
Merge pull request #3338 from Sweetdevil144/gsoc/convert-input
infotroph
authored
Update documentation/tutorials/Demo_02_Uncertainty_Analysis/uncertainty.qmd
AritraDey-Dev
authored
fix spacing
AritraDey-Dev
committed
Add debias code.
Dongchen Zhang
committed
Roxygen
infotroph
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manpage too
infotroph
committed

Commits on Oct 18, 2025

Move the previous debias script to the inst folder.
Dongchen Zhang
committed
remove previous debias functions.
Dongchen Zhang
committed
Add the main SDA debias workflow.
Dongchen Zhang
committed
Add the new debias workflow to the multi-site version.
Dongchen Zhang
committed
Add the new bias correction workflow to the sda_local script.
Dongchen Zhang
committed
Add the new SDA debiasing workflow to the SDA job submission function.
Dongchen Zhang
committed
feat(db): Re-enable PFT cultivar query test
AritraDey-Dev
committed

Commits on Oct 19, 2025

Move out of the if control.
Dongchen Zhang
committed
Bug fix.
Dongchen Zhang
committed
Bug fix
Dongchen Zhang
committed
Remove the condition for the wrapping where we have more than 20 characters.
Dongchen Zhang
committed
Merge pull request #3651 from AritraDey-Dev/fix/reenable-db-test
infotroph
authored
Update the runner script.
Dongchen Zhang
committed

Commits on Oct 20, 2025

test: note expected output length and specific variable checks
AritraDey-Dev
committed
fix: api container failed to start due to issue in ma.R file
AritraDey-Dev
committed
Merge pull request #3653 from AritraDey-Dev/fix/api-docker-container
infotroph
authored
remove arg.
Dongchen Zhang
committed
Update script.
Dongchen Zhang
committed
Revert "Move out of the if control."
Dongchen Zhang
committed
Resolve conflicts.
Dongchen Zhang
committed
Revert back.
Dongchen Zhang
committed
changelog
infotroph
committed
Update CHANGELOG.md
infotroph
authored
return NA if no validator

dlebauer
and
infotroph
authored
Update models/sipnet/DESCRIPTION

dlebauer
and
infotroph
authored
Update docker/depends/pecan_package_dependencies.csv

dlebauer
and
infotroph
authored
- require testthat >= 3.1.0 to support new mocking features in tests (3.1.0 was released in 2021)
dlebauer
committed
Update CHANGELOG and NEWS
dlebauer
committed
Update testthat version requirement and documentation for validate_events_json
dlebauer
committed
Merge branch 'develop' into write_events_sipnet
dlebauer
authored

Commits on Oct 21, 2025

Update str_ns declaration

Sweetdevil144
authored and
infotroph
committed
Update site$lon

Sweetdevil144
authored and
infotroph
committed
Update models/ed/tests/testthat/test-read_ET_files.R

AritraDey-Dev
and
infotroph
authored
Merge pull request #3652 from AritraDey-Dev/tests/update-output-expectation
infotroph
authored
do not assume id is numeric when assigning str_ns
infotroph
committed
Revert to using the new debias workflow.
Dongchen Zhang
committed
Update document.
Dongchen Zhang
committed
Update document.
Dongchen Zhang
committed
Update the runner script.
Dongchen Zhang
committed
Update the bias correction function.
Dongchen Zhang
committed
Update the usage of the bias correction workflow.
Dongchen Zhang
committed
Merge branch 'PecanProject:develop' into SDA_data
DongchenZ
authored
Update observation paths.
Dongchen Zhang
committed
Update namespace.
Dongchen Zhang
committed
Merge branch 'SDA_data' of https://github.com/DongchenZ/pecan into SDA_data
Dongchen Zhang
committed
Modify the test to match the change in the logger.message function.
Dongchen Zhang
committed
Change the default value of wrap in the logger message function.
Dongchen Zhang
committed
Revert back.
Dongchen Zhang
committed
data.frame does not allow starting with null cols
infotroph
committed
move NEWS into unreleased section
infotroph
committed
Merge pull request #8 from dlebauer/quarto-ensemble-sensivity
AritraDey-Dev
authored
migrate pecan outputs block from demo 1 to demo 2
AritraDey-Dev
committed
add changes in demo 2
AritraDey-Dev
committed
Update runner script.
Dongchen Zhang
committed
Modify configuration.
Dongchen Zhang
committed

Commits on Oct 22, 2025

Merge pull request #3656 from infotroph/siteID-refactor-rebase
infotroph
authored

Commits on Oct 27, 2025

dbsync build assumes cwd
infotroph
committed

Commits on Oct 28, 2025

Commits on Nov 4, 2025

Commits on Nov 6, 2025

Commits on Nov 9, 2025

doc, ::, whitespace
infotroph
committed

Commits on Nov 11, 2025

Commits on Nov 15, 2025

Merge pull request #10 from dlebauer/uncertainty_demo_update
AritraDey-Dev
authored

Commits on Nov 17, 2025

Merge branch 'develop' into docker-use-arm-45
infotroph
authored

Commits on Nov 18, 2025

Merge pull request #3655 from infotroph/docker-use-arm-45
infotroph
authored

Commits on Nov 20, 2025

fix pft outdir path
AritraDey-Dev
committed
Update CHANGELOG.md

AritraDey-Dev
and
infotroph
authored
Update documentation/tutorials/Demo_02_Uncertainty_Analysis/uncertainty.qmd

AritraDey-Dev
and
infotroph
authored
Update documentation/tutorials/Demo_02_Uncertainty_Analysis/uncertainty.qmd

AritraDey-Dev
and
infotroph
authored
Update documentation/tutorials/Demo_02_Uncertainty_Analysis/uncertainty.qmd

AritraDey-Dev
and
infotroph
authored
Update documentation/tutorials/Demo_02_Uncertainty_Analysis/uncertainty.qmd

AritraDey-Dev
and
infotroph
authored
Update documentation/tutorials/Demo_02_Uncertainty_Analysis/uncertainty.qmd

AritraDey-Dev
and
infotroph
authored
fix: output directory structure
AritraDey-Dev
committed
Update .github/workflows/render-quarto.yml

AritraDey-Dev
and
infotroph
authored
Bug fixes for the indexing error.
Dongchen Zhang
committed
Fix the issue when X is a data frame.
Dongchen Zhang
committed
Add the adjustment to the analysis block function.
Dongchen Zhang
committed
Add the adjustment to the function.
Dongchen Zhang
committed
Add the residual lag to the SDA ML debiasing workflow.
Dongchen Zhang
committed
Use pre-defined soil depth for the soil physics calculation.
Dongchen Zhang
committed
Resolve conflicts.
Dongchen Zhang
committed
Add comments for the reason of returning the list object.
Dongchen Zhang
committed
Fix the logic where we already generated analysis from the analysis block function.
Dongchen Zhang
committed
Fix unit error in leafCSpWt calculation: Percent-to-fraction conversion now propagated back to LeafC

infotroph
and
Qianyuxuan
committed
Merge pull request #3664 from infotroph/sipnet-leaf-units-again
infotroph
authored
Remove the ensemble.samples argument.
Dongchen Zhang
committed
Update documentation.
Dongchen Zhang
committed
relicense PEcAn.uncertainty as BSD3 with agreement of all contributors
infotroph
committed

Commits on Nov 21, 2025

Commits on Nov 24, 2025

Commits on Nov 26, 2025

Commits on Nov 28, 2025

build(docs): misc cleanups & add serve rule to book_Makefile
AritraDey-Dev
committed

Commits on Nov 29, 2025

Commits on Nov 30, 2025

Merge pull request #3685 from AritraDey-Dev/cleanup-in-makefile
infotroph
authored

Commits on Dec 1, 2025

Merge pull request #3686 from infotroph/fix-ensure-version-bump
infotroph
authored

Commits on Dec 6, 2025

Commits on Dec 7, 2025

Merge pull request #3704 from infotroph/model-pkg-version-bump
dlebauer
authored

Commits on Dec 11, 2025

Commits on Dec 12, 2025

Merge pull request #3715 from infotroph/v110-version-bump
infotroph
authored

Commits on Dec 16, 2025

date fix
infotroph
committed

Commits on Dec 17, 2025

Apply suggestions from code review
infotroph
authored

Commits on Dec 18, 2025

date fix
infotroph
committed

Commits on Dec 19, 2025

date fix
infotroph
committed

Commits on Dec 24, 2025

date
infotroph
committed

Commits on Dec 25, 2025

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infotroph
committed

Commits on Dec 28, 2025

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infotroph
committed

Commits on Dec 29, 2025

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infotroph
committed

Commits on Dec 31, 2025

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infotroph
committed

Commits on Jan 2, 2026

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infotroph
committed