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38 changes: 36 additions & 2 deletions content/_config.yml
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@

#######################################################################################
# Book settings
title : "Introduction to brain encoding and decoding in fMRI" # The title of the book. Will be placed in the left navbar.
title : "Introduction to brain decoding in fMRI" # The title of the book. Will be placed in the left navbar.
author : # The author of the book
copyright : "2022" # Copyright year to be placed in the footer
logo : "../images/neurolibre-logo.png" # A path to the book logo
Expand All @@ -30,7 +30,8 @@ html:
google_analytics_id : "" # A GA id that can be used to track book views.
home_page_in_navbar : true # Whether to include your home page in the left Navigation Bar
baseurl : "https://main-educational.github.io/brain_encoding_decoding/" # The base URL where your book will be hosted. Used for creating image previews and social links. e.g.: https://mypage.com/mybook/

comments:
hypothesis: true
#######################################################################################
# Launch button settings
launch_buttons:
Expand All @@ -55,6 +56,39 @@ sphinx:
config:
html_js_files:
- https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js
nb_custom_formats:
.Rmd:
- jupytext.reads
- fmt: Rmd
mathjax_config:
TeX:
Macros:
"N": "\\mathbb{N}"
"floor": ["\\lfloor#1\\rfloor", 1]
"bmat": ["\\left[\\begin{array}"]
"emat": ["\\end{array}\\right]"]
latex_elements:
preamble: |
\newcommand\N{\mathbb{N}}
\newcommand\floor[1]{\lfloor#1\rfloor}
\newcommand{\bmat}{\left[\begin{array}}
\newcommand{\emat}{\end{array}\right]}
intersphinx_mapping:
ebp:
- "https://executablebooks.org/en/latest/"
- null
myst-parser:
- "https://myst-parser.readthedocs.io/en/latest/"
- null
myst-nb:
- "https://myst-nb.readthedocs.io/en/latest/"
- null
sphinx:
- "https://www.sphinx-doc.org/en/master"
- null
nbformat:
- "https://nbformat.readthedocs.io/en/latest"
- null

#######################################################################################
# parse settings
Expand Down
2 changes: 1 addition & 1 deletion content/conf.py
Original file line number Diff line number Diff line change
Expand Up @@ -54,7 +54,7 @@
#
html_title = ""
html_theme = "sphinx_book_theme"
html_logo = "_static/cog_com_neuro_ml_dl.png"
html_logo = "images/neurolibre_logo.png"
html_theme_options = {
"github_url": "https://github.com/main-educational/brain_encoding_decoding",
"repository_url": "https://github.com/main-educational/brain_encoding_decoding",
Expand Down
Binary file added content/graphics/decoding_pipeline_example.png
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