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342 changes: 171 additions & 171 deletions .github/workflows/pythonapp-min.yml
Original file line number Diff line number Diff line change
@@ -1,171 +1,171 @@
# Jenkinsfile.monai-premerge
name: premerge-min

on:
# quick tests for pull requests and the releasing branches
push:
branches:
- main
pull_request:

concurrency:
# automatically cancel the previously triggered workflows when there's a newer version
group: build-min-${{ github.event.pull_request.number || github.ref }}
cancel-in-progress: true

jobs:
# caching of these jobs:
# - docker-py3-pip- (shared)
# - ubuntu py37 pip-
# - os-latest-pip- (shared)
min-dep-os: # min dependencies installed tests for different OS
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [windows-latest, macOS-latest, ubuntu-latest]
timeout-minutes: 40
steps:
- uses: actions/checkout@v3
- name: Set up Python 3.8
uses: actions/setup-python@v4
with:
python-version: '3.8'
- name: Prepare pip wheel
run: |
which python
python -m pip install --upgrade pip wheel
- name: cache weekly timestamp
id: pip-cache
run: |
echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
shell: bash
- name: cache for pip
uses: actions/cache@v3
id: cache
with:
path: ${{ steps.pip-cache.outputs.dir }}
key: ${{ matrix.os }}-latest-pip-${{ steps.pip-cache.outputs.datew }}
- if: runner.os == 'windows'
name: Install torch cpu from pytorch.org (Windows only)
run: |
python -m pip install torch==1.13.1+cpu -f https://download.pytorch.org/whl/torch_stable.html
- name: Install the dependencies
run: |
# min. requirements
python -m pip install torch==1.13.1
python -m pip install -r requirements-min.txt
python -m pip list
BUILD_MONAI=0 python setup.py develop # no compile of extensions
shell: bash
- name: Run quick tests (CPU ${{ runner.os }})
run: |
python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))'
python -c "import monai; monai.config.print_config()"
./runtests.sh --min
shell: bash
env:
QUICKTEST: True

min-dep-py3: # min dependencies installed tests for different python
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ['3.7', '3.8', '3.9', '3.10', '3.11']
timeout-minutes: 40
steps:
- uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Prepare pip wheel
run: |
which python
python -m pip install --user --upgrade pip setuptools wheel
- name: cache weekly timestamp
id: pip-cache
run: |
echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
shell: bash
- name: cache for pip
uses: actions/cache@v3
id: cache
with:
path: ${{ steps.pip-cache.outputs.dir }}
key: ubuntu-latest-latest-pip-${{ steps.pip-cache.outputs.datew }}
- name: Install the dependencies
run: |
# min. requirements
python -m pip install torch --extra-index-url https://download.pytorch.org/whl/cpu
python -m pip install -r requirements-min.txt
python -m pip list
BUILD_MONAI=0 python setup.py develop # no compile of extensions
shell: bash
- name: Run quick tests (CPU ${{ runner.os }})
run: |
python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))'
python -c "import monai; monai.config.print_config()"
./runtests.sh --min
env:
QUICKTEST: True

min-dep-pytorch: # min dependencies installed tests for different pytorch
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
pytorch-version: ['1.8.2', '1.9.1', '1.10.2', '1.11.0', '1.12.1', 'latest']
timeout-minutes: 40
steps:
- uses: actions/checkout@v3
- name: Set up Python 3.8
uses: actions/setup-python@v4
with:
python-version: '3.8'
- name: Prepare pip wheel
run: |
which python
python -m pip install --user --upgrade pip setuptools wheel
- name: cache weekly timestamp
id: pip-cache
run: |
echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
shell: bash
- name: cache for pip
uses: actions/cache@v3
id: cache
with:
path: ${{ steps.pip-cache.outputs.dir }}
key: ubuntu-latest-latest-pip-${{ steps.pip-cache.outputs.datew }}
- name: Install the dependencies
run: |
# min. requirements
if [ ${{ matrix.pytorch-version }} == "latest" ]; then
python -m pip install torch
elif [ ${{ matrix.pytorch-version }} == "1.8.2" ]; then
python -m pip install torch==1.8.2 --extra-index-url https://download.pytorch.org/whl/lts/1.8/cpu
elif [ ${{ matrix.pytorch-version }} == "1.9.1" ]; then
python -m pip install torch==1.9.1
elif [ ${{ matrix.pytorch-version }} == "1.10.2" ]; then
python -m pip install torch==1.10.2
elif [ ${{ matrix.pytorch-version }} == "1.11.0" ]; then
python -m pip install torch==1.11.0
elif [ ${{ matrix.pytorch-version }} == "1.12.1" ]; then
python -m pip install torch==1.12.1
fi
python -m pip install -r requirements-min.txt
python -m pip list
BUILD_MONAI=0 python setup.py develop # no compile of extensions
shell: bash
- name: Run quick tests (pytorch ${{ matrix.pytorch-version }})
run: |
python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))'
python -c "import monai; monai.config.print_config()"
./runtests.sh --min
env:
QUICKTEST: True
## Jenkinsfile.monai-premerge
#name: premerge-min
#
#on:
# # quick tests for pull requests and the releasing branches
# push:
# branches:
# - main
# pull_request:
#
#concurrency:
# # automatically cancel the previously triggered workflows when there's a newer version
# group: build-min-${{ github.event.pull_request.number || github.ref }}
# cancel-in-progress: true
#
#jobs:
# # caching of these jobs:
# # - docker-py3-pip- (shared)
# # - ubuntu py37 pip-
# # - os-latest-pip- (shared)
# min-dep-os: # min dependencies installed tests for different OS
# runs-on: ${{ matrix.os }}
# strategy:
# fail-fast: false
# matrix:
# os: [windows-latest, macOS-latest, ubuntu-latest]
# timeout-minutes: 40
# steps:
# - uses: actions/checkout@v3
# - name: Set up Python 3.8
# uses: actions/setup-python@v4
# with:
# python-version: '3.8'
# - name: Prepare pip wheel
# run: |
# which python
# python -m pip install --upgrade pip wheel
# - name: cache weekly timestamp
# id: pip-cache
# run: |
# echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
# echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
# shell: bash
# - name: cache for pip
# uses: actions/cache@v3
# id: cache
# with:
# path: ${{ steps.pip-cache.outputs.dir }}
# key: ${{ matrix.os }}-latest-pip-${{ steps.pip-cache.outputs.datew }}
# - if: runner.os == 'windows'
# name: Install torch cpu from pytorch.org (Windows only)
# run: |
# python -m pip install torch==1.13.1+cpu -f https://download.pytorch.org/whl/torch_stable.html
# - name: Install the dependencies
# run: |
# # min. requirements
# python -m pip install torch==1.13.1
# python -m pip install -r requirements-min.txt
# python -m pip list
# BUILD_MONAI=0 python setup.py develop # no compile of extensions
# shell: bash
# - name: Run quick tests (CPU ${{ runner.os }})
# run: |
# python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))'
# python -c "import monai; monai.config.print_config()"
# ./runtests.sh --min
# shell: bash
# env:
# QUICKTEST: True
#
# min-dep-py3: # min dependencies installed tests for different python
# runs-on: ubuntu-latest
# strategy:
# fail-fast: false
# matrix:
# python-version: ['3.7', '3.8', '3.9', '3.10', '3.11']
# timeout-minutes: 40
# steps:
# - uses: actions/checkout@v3
# - name: Set up Python ${{ matrix.python-version }}
# uses: actions/setup-python@v4
# with:
# python-version: ${{ matrix.python-version }}
# - name: Prepare pip wheel
# run: |
# which python
# python -m pip install --user --upgrade pip setuptools wheel
# - name: cache weekly timestamp
# id: pip-cache
# run: |
# echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
# echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
# shell: bash
# - name: cache for pip
# uses: actions/cache@v3
# id: cache
# with:
# path: ${{ steps.pip-cache.outputs.dir }}
# key: ubuntu-latest-latest-pip-${{ steps.pip-cache.outputs.datew }}
# - name: Install the dependencies
# run: |
# # min. requirements
# python -m pip install torch --extra-index-url https://download.pytorch.org/whl/cpu
# python -m pip install -r requirements-min.txt
# python -m pip list
# BUILD_MONAI=0 python setup.py develop # no compile of extensions
# shell: bash
# - name: Run quick tests (CPU ${{ runner.os }})
# run: |
# python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))'
# python -c "import monai; monai.config.print_config()"
# ./runtests.sh --min
# env:
# QUICKTEST: True
#
# min-dep-pytorch: # min dependencies installed tests for different pytorch
# runs-on: ubuntu-latest
# strategy:
# fail-fast: false
# matrix:
# pytorch-version: ['1.8.2', '1.9.1', '1.10.2', '1.11.0', '1.12.1', 'latest']
# timeout-minutes: 40
# steps:
# - uses: actions/checkout@v3
# - name: Set up Python 3.8
# uses: actions/setup-python@v4
# with:
# python-version: '3.8'
# - name: Prepare pip wheel
# run: |
# which python
# python -m pip install --user --upgrade pip setuptools wheel
# - name: cache weekly timestamp
# id: pip-cache
# run: |
# echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT
# echo "dir=$(pip cache dir)" >> $GITHUB_OUTPUT
# shell: bash
# - name: cache for pip
# uses: actions/cache@v3
# id: cache
# with:
# path: ${{ steps.pip-cache.outputs.dir }}
# key: ubuntu-latest-latest-pip-${{ steps.pip-cache.outputs.datew }}
# - name: Install the dependencies
# run: |
# # min. requirements
# if [ ${{ matrix.pytorch-version }} == "latest" ]; then
# python -m pip install torch
# elif [ ${{ matrix.pytorch-version }} == "1.8.2" ]; then
# python -m pip install torch==1.8.2 --extra-index-url https://download.pytorch.org/whl/lts/1.8/cpu
# elif [ ${{ matrix.pytorch-version }} == "1.9.1" ]; then
# python -m pip install torch==1.9.1
# elif [ ${{ matrix.pytorch-version }} == "1.10.2" ]; then
# python -m pip install torch==1.10.2
# elif [ ${{ matrix.pytorch-version }} == "1.11.0" ]; then
# python -m pip install torch==1.11.0
# elif [ ${{ matrix.pytorch-version }} == "1.12.1" ]; then
# python -m pip install torch==1.12.1
# fi
# python -m pip install -r requirements-min.txt
# python -m pip list
# BUILD_MONAI=0 python setup.py develop # no compile of extensions
# shell: bash
# - name: Run quick tests (pytorch ${{ matrix.pytorch-version }})
# run: |
# python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))'
# python -c "import monai; monai.config.print_config()"
# ./runtests.sh --min
# env:
# QUICKTEST: True