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133 dataset and example with dict transforms #134

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Merged
wyli merged 6 commits into from
Mar 5, 2020
Merged

133 dataset and example with dict transforms #134

wyli merged 6 commits into from
Mar 5, 2020

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@Nic-Ma
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@Nic-Ma Nic-Ma commented Mar 3, 2020 •
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Fixes #133 .

Description

This PR implemented below items:

  1. Added a dict level transform: AddChanneld and the unit test.
  2. Added support to dict level transforms in NiftiDataset.
  3. Developed UNet 3D training & validation examples based on NiftiDataset and dict transforms.
  4. Fixed a numpy data error in RandomRotate90 transform.
  5. Unified "DataElementKeys" and "ImageProperties" as constants.

Status

Ready

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • Breaking change (fix or new feature that would cause existing functionality to change)
  • New tests added to cover the changes
  • Docstrings/Documentation updated

@Nic-Ma Nic-Ma requested review from atbenmurray, ericspod and wyli March 3, 2020 14:18
@Nic-Ma Nic-Ma force-pushed the 133-dataset-example-dict-transforms branch from 84ae2cc to f5cca26 Compare March 4, 2020 03:32
@Nic-Ma
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Nic-Ma commented Mar 4, 2020

I updated this PR to split NiftiDataset and NifitDatasetd directly according to @wyli 's comments.
Could you please help review again and share comments if you have?
Thanks.

@Nic-Ma
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Nic-Ma commented Mar 5, 2020

Hi @wyli @ericspod @atbenmurray ,

I fixed conflicts with master branch and removed constants, let's discuss constants after GTC.
Could you please help review it again?
Thank.

wyli
wyli approved these changes Mar 5, 2020
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@wyli wyli merged commit 7f29477 into master Mar 5, 2020
@wyli wyli deleted the 133-dataset-example-dict-transforms branch May 21, 2020 13:31
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@wyli wyli wyli approved these changes

@ericspod ericspod Awaiting requested review from ericspod

@atbenmurray atbenmurray Awaiting requested review from atbenmurray

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dataset and train example with dict transforms

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@Nic-Ma @wyli