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@kate-sann5100 kate-sann5100 commented Jan 9, 2021

Fixes #1412 .

Description

Add global mutual information

Status

Ready/Work in progress/Hold

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh --codeformat --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

kate-sann5100 and others added 14 commits January 6, 2021 21:15
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
@kate-sann5100 kate-sann5100 changed the title [WIP] 1412 global mutual information 1412 global mutual information Jan 9, 2021
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wyli commented Jan 10, 2021

thanks, this is nice, could you add an integration test? like this file: https://github.com/Project-MONAI/MONAI/blob/master/tests/test_seg_loss_integration.py (could be simpler than it, just wanted to verify that the new losses are differentiable)

  • also please merge the latest master into this branch and resolve the conflicts

…mutual-information

Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
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thanks, this is nice, could you add an integration test? like this file: https://github.com/Project-MONAI/MONAI/blob/master/tests/test_seg_loss_integration.py (could be simpler than it, just wanted to verify that the new losses are differentiable)

  • also please merge the latest master into this branch and resolve the conflicts

Sure, I am happy to work on that.

@kate-sann5100 kate-sann5100 changed the title 1412 global mutual information [WIP]1412 global mutual information Jan 10, 2021
kate-sann5100 and others added 4 commits January 11, 2021 14:16
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
…into 1412-global-mutual-information

Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
@kate-sann5100 kate-sann5100 force-pushed the 1412-global-mutual-information branch from 2ea7b09 to a539fa7 Compare January 11, 2021 15:04
kate-sann5100 and others added 6 commits January 11, 2021 15:12
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
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thanks, there are a few typos i guess were introduced by auto substitutions, otherwise it looks good to me

Signed-off-by: kate-sann5100 <yiwen.li@st-annes.ox.ac.uk>
@kate-sann5100 kate-sann5100 changed the title [WIP]1412 global mutual information 1412 global mutual information Jan 11, 2021
@wyli wyli force-pushed the 1412-global-mutual-information branch from 00cb45f to f616813 Compare January 12, 2021 20:09
@wyli wyli merged commit a9e3654 into Project-MONAI:master Jan 12, 2021
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add image dissimilarity loss

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