[WIP] Adding Stain Normalization Transform for Pathology#1912

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nsrivathsa wants to merge 55 commits intoProject-MONAI:masterfrom

nsrivathsa:neha/stain-norm

Commits on Apr 12, 2021

Update CuCIM (#1909)

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Update pathology unittests (#1910)

bhashemian
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added stain norm transform

Alvin Ihsani
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Update prob map handler (#1911)

bhashemian
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Implement dice_focal loss (#1914)

yiheng-wang-nv
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followup of #1878 (#1913)

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1868-fix-potential-inf-in-lncc-loss (#1915)

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1919 - test pt 2103 (#1920)

wyli
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fixes typos (#1924)

wyli
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1900 Add support to save patch data into NIfTI or PNG files (#1922)

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Revert "1919 - test pt 2103 (#1920)" (#1925)

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skip warp tests before torch 18 (#1927)

wyli
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update docstrings (#1931)

wyli
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update get_package_version (#1930)

wyli
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1904 Add early stop handler (#1921)

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1900 Change to save `patch_index` in the meta_dict (#1933)

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enhance min/exact version check (#1937)

wyli
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Enabled partial checkpoint loading (#1936)

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fixes issue of typing with py3.6 (#1942)

wyli
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Make ProbNMS a Transform (#1941)

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fixes ThreadDataLoader (#1945)

wyli
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fixes itk dep. version (#1944)

wyli
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Garbage Collector Handler (#1940)

bhashemian
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style and api changes

Alvin Ihsani
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1939 Add strict_shape option in CheckpointLoader (#1946)

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1947 Enhance load decathlon datalist API (#1948)

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Add progress bar to LesionFROC (#1951)

bhashemian
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pipeline for releasing the docker images (#1953)

wyli
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remove unused RandomizableTransform (#1952)

wyli
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1956 - docker image building pipelines (#1957)

wyli
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1955 style issue (#1958)

wyli
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Update garbage collection assertion (#1959)

bhashemian
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Working ParameterScheduler (#1949)

danieltudosiu
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[DLMED] remove warning (#1962)

Nic-Ma
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1916 Add support for custom events in workflows (#1961)

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added cupy requirement

Alvin Ihsani
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1965 - register_backward_hook (#1966)

wyli
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1968 Enhance meta data doc-string in SegmentationSaver (#1969)

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made cupy an optional import
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minor changes per comments
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Adding EfficientNetsB0-B7 support (#1938)

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1866 Add TransformInverter handler (#1970)

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1889 - changelog for v0.5.0 (#1923)

wyli
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1977 Support different inverse interpolation mode (#1978)

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Update technical highlights for v0.5 (#1981)

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1973 - docstring update convs example (#1980)

wyli
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test runner (#1986)

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1987 Add support for a list of Tensor in metrics handlers (#1988)

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add timeout (#1989)

wyli
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fixes ci error handling (#1990)

wyli
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1889 update preview version number (#1991)

wyli
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minor formatting change
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fix comprehension error (#1995)

rijobro
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Import cupy for type checking

bhashemian
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added unit tests
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