188 setup docker image

.gitignore

@@ -103,7 +103,7 @@ venv.bak/
 # mypy
 .mypy_cache/
 examples/scd_lvsegs.npz
-.temp/
+temp/
 .idea/
 
 *~

Dockerfile

@@ -0,0 +1,35 @@
+# Copyright 2020 MONAI Consortium
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#     http://www.apache.org/licenses/LICENSE-2.0
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+ARG PYTORCH_IMAGE=nvcr.io/nvidia/pytorch:19.10-py3
+
+FROM ${PYTORCH_IMAGE} as base
+RUN apt-get update
+
+WORKDIR /opt/monai
+COPY . .
+
+ENV PYTHONPATH=$PYTHONPATH:/opt/monai
+ENV PATH=/opt/tools:$PATH
+
+RUN python -m pip install -U pip
+# remove preintalls
+RUN python -m pip uninstall -y torch torchvision
+# install dependencies
+RUN python -m pip install -r requirements.txt
+
+
+# NGC Client
+WORKDIR /opt/tools
+RUN wget -q https://ngc.nvidia.com/downloads/ngccli_cat_linux.zip && \
+    unzip ngccli_cat_linux.zip && chmod u+x ngc && \
+    rm -rf ngccli_cat_linux.zip ngc.md5
+WORKDIR /opt/monai

README.md

@@ -20,14 +20,17 @@ MONAI is a [PyTorch](https://pytorch.org/)-based, [open-source](https://github.c
 - multi-GPU data parallelism support.
 
 ## Installation
-Clone and build this repository from source
-
-```bash
-git clone https://github.com/Project-MONAI/MONAI.git
-pip install -e MONAI/
-```
-
-Run some of the examples in [Getting Started](##getting-started)
+Clone and build this repository from source:
+  ```bash
+  git clone https://github.com/Project-MONAI/MONAI.git
+  pip install -e MONAI/
+  ```
+
+Alternatively, pre-built Docker image is available via [DockerHub](https://hub.docker.com/r/projectmonai/monai):
+  ```bash
+  # with docker v19.03+
+  docker run --gpus all --rm -ti --ipc=host projectmonai/monai:latest
+  ```
 
 ## Getting Started
 

examples/README.md

@@ -0,0 +1,9 @@
+Most of the examples and tutorials require
+[matplotlib](https://matplotlib.org/) and [Jupyter Notebook](https://jupyter.org/).
+
+These could be installed by:
+```bash
+python -m pip install -U pip
+python -m pip install -U matplotlib
+python -m pip install -U notebook
+```

requirements.txt

@@ -1,10 +1,10 @@
 torch>=1.4
 pytorch-ignite==0.3.0
 numpy
-jupyter
+nibabel
+tensorboard
 pillow
+scipy
+scikit-image
 coverage
-nibabel
 parameterized
-tensorboard
-scipy