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itk dep <=5.1.2 #1944

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Merged
wyli merged 2 commits into from
Apr 5, 2021
Merged

itk dep <=5.1.2 #1944

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1c16b5f
fixes itk dep. version
wyli Apr 5, 2021
eb7b842
adds random delay for ci; c.f. #1243
wyli Apr 5, 2021
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9 changes: 8 additions & 1 deletion .github/workflows/pythonapp.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -281,12 +281,19 @@ jobs:
python -m pip install --upgrade pip wheel
python -m pip install ${{ matrix.pytorch }}
python -m pip install -r requirements-dev.txt
python -m pip list
- name: Run quick tests (GPU)
run: |
python -m pip list
nvidia-smi
export LAUNCH_DELAY=$(( RANDOM % 30 * 5 ))
echo "Sleep $LAUNCH_DELAY"
sleep $LAUNCH_DELAY
export CUDA_VISIBLE_DEVICES=$(coverage run -m tests.utils)
echo $CUDA_VISIBLE_DEVICES
stop_time=$((LAUNCH_DELAY + $(date +%s)))
while [ $(date +%s) -lt $stop_time ]; do
python -c 'import torch; torch.rand(5, 3, device=torch.device("cuda:0"))';
done
python -c "import torch; print(torch.__version__); print('{} of GPUs available'.format(torch.cuda.device_count()))"
python -c 'import torch; print(torch.rand(5, 3, device=torch.device("cuda:0")))'
python -c "import monai; monai.config.print_config()"
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2 changes: 1 addition & 1 deletion docs/requirements.txt
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Expand Up @@ -2,7 +2,7 @@
torch>=1.5
pytorch-ignite==0.4.4
numpy>=1.17
itk>=5.0
itk>=5.0, <=5.1.2
nibabel
cucim==0.18.2
openslide-python==1.1.2
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2 changes: 1 addition & 1 deletion requirements-dev.txt
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Expand Up @@ -3,7 +3,7 @@
pytorch-ignite==0.4.4
gdown>=3.6.4
scipy
itk>=5.0
itk>=5.0, <=5.1.2
nibabel
pillow
tensorboard
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4 changes: 2 additions & 2 deletions setup.cfg
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Expand Up @@ -36,7 +36,7 @@ all =
pytorch-ignite==0.4.4
gdown>=3.6.4
torchvision
itk>=5.0
itk>=5.0, <=5.1.2
tqdm>=4.47.0
cucim==0.18.2
openslide-python==1.1.2
Expand All @@ -55,7 +55,7 @@ ignite =
torchvision =
torchvision
itk =
itk>=5.0
itk>=5.0, <=5.1.2
tqdm =
tqdm>=4.47.0
lmdb =
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