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114 changes: 0 additions & 114 deletions .github/workflows/pythonapp.yml
Original file line number Diff line number Diff line change
Expand Up @@ -200,120 +200,6 @@ jobs:
env:
QUICKTEST: True

GPU-quick-py3: # GPU with full dependencies
if: github.repository == 'Project-MONAI/MONAI'
strategy:
matrix:
environment:
- "PT16+CUDA110"
- "PT17+CUDA102"
- "PT17+CUDA110"
- "PT18+CUDA102"
- "PT19+CUDA113"
- "PT19+CUDA102"
include:
- environment: PT16+CUDA110
# we explicitly set pytorch to -h to avoid pip install error
pytorch: "-h"
base: "nvcr.io/nvidia/pytorch:20.07-py3"
- environment: PT17+CUDA102
pytorch: "torch==1.7.1 torchvision==0.8.2"
base: "nvcr.io/nvidia/cuda:10.2-devel-ubuntu18.04"
- environment: PT17+CUDA110
# we explicitly set pytorch to -h to avoid pip install error
pytorch: "-h"
base: "nvcr.io/nvidia/pytorch:20.09-py3"
- environment: PT18+CUDA102
pytorch: "torch==1.8.1 torchvision==0.9.1"
base: "nvcr.io/nvidia/cuda:10.2-devel-ubuntu18.04"
- environment: PT19+CUDA113
# we explicitly set pytorch to -h to avoid pip install error
pytorch: "-h"
base: "nvcr.io/nvidia/pytorch:21.06-py3"
- environment: PT19+CUDA102
pytorch: "torch==1.9.0 torchvision==0.10.0"
base: "nvcr.io/nvidia/cuda:10.2-devel-ubuntu18.04"
container:
image: ${{ matrix.base }}
options: --gpus all
runs-on: [self-hosted, linux, x64, common]
steps:
- uses: actions/checkout@v2
- name: apt install
run: |
if [ ${{ matrix.environment }} = "PT17+CUDA102" ] || \
[ ${{ matrix.environment }} = "PT18+CUDA102" ] || \
[ ${{ matrix.environment }} = "PT19+CUDA102" ]
then
PYVER=3.6 PYSFX=3 DISTUTILS=python3-distutils && \
apt-get update && apt-get install -y --no-install-recommends \
curl \
pkg-config \
python$PYVER \
python$PYVER-dev \
python$PYSFX-pip \
$DISTUTILS \
rsync \
swig \
unzip \
zip \
zlib1g-dev \
libboost-locale-dev \
libboost-program-options-dev \
libboost-system-dev \
libboost-thread-dev \
libboost-test-dev \
libgoogle-glog-dev \
libjsoncpp-dev \
cmake \
git && \
rm -rf /var/lib/apt/lists/* && \
export PYTHONIOENCODING=utf-8 LC_ALL=C.UTF-8 && \
rm -f /usr/bin/python && \
rm -f /usr/bin/python`echo $PYVER | cut -c1-1` && \
ln -s /usr/bin/python$PYVER /usr/bin/python && \
ln -s /usr/bin/python$PYVER /usr/bin/python`echo $PYVER | cut -c1-1` &&
curl -O https://bootstrap.pypa.io/get-pip.py && \
python get-pip.py && \
rm get-pip.py;
fi
- name: Install dependencies
run: |
which python
python -m pip install --upgrade pip wheel
python -m pip install ${{ matrix.pytorch }}
python -m pip install -r requirements-dev.txt
python -m pip list
- name: Run quick tests (GPU)
run: |
git clone --depth 1 \
https://github.com/Project-MONAI/MONAI-extra-test-data.git /MONAI-extra-test-data
export MONAI_EXTRA_TEST_DATA="/MONAI-extra-test-data"
nvidia-smi
export LAUNCH_DELAY=$(python -c "import numpy; print(numpy.random.randint(30) * 10)")
echo "Sleep $LAUNCH_DELAY"
sleep $LAUNCH_DELAY
export CUDA_VISIBLE_DEVICES=$(coverage run -m tests.utils)
echo $CUDA_VISIBLE_DEVICES
trap 'if pgrep python; then pkill python; fi;' ERR
python -c $'import torch\na,b=torch.zeros(1,device="cuda:0"),torch.zeros(1,device="cuda:1");\nwhile True:print(a,b)' > /dev/null &
python -c "import torch; print(torch.__version__); print('{} of GPUs available'.format(torch.cuda.device_count()))"
python -c 'import torch; print(torch.rand(5, 3, device=torch.device("cuda:0")))'
python -c "import monai; monai.config.print_config()"
# build for the current self-hosted CI Tesla V100
BUILD_MONAI=1 TORCH_CUDA_ARCH_LIST="7.0" ./runtests.sh --quick --unittests
if [ ${{ matrix.environment }} = "PT19+CUDA102" ]; then
# test the clang-format tool downloading once
coverage run -m tests.clang_format_utils
fi
coverage xml
if pgrep python; then pkill python; fi
shell: bash
- name: Upload coverage
uses: codecov/codecov-action@v1
with:
file: ./coverage.xml

packaging:
runs-on: ubuntu-latest
steps:
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1 change: 1 addition & 0 deletions CONTRIBUTING.md
Original file line number Diff line number Diff line change
Expand Up @@ -257,6 +257,7 @@ All code review comments should be specific, constructive, and actionable.
1. Make in-line comments to specific code segments, [request for changes](https://help.github.com/en/github/collaborating-with-issues-and-pull-requests/about-pull-request-reviews) if needed.
1. Review any further code changes until all comments addressed by the contributors.
1. Comment to trigger `/black` and/or `/integration-test` for optional auto code formatting and [integration tests](.github/workflows/integration.yml).
1. [Maintainers] Review the changes and comment `/build` to trigger internal full tests.
1. Merge the pull request to the dev branch.
1. Close the corresponding task ticket on [the issue list][monai issue list].

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