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Add make the name of wsi reader lowercase #2973

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Merged
wyli merged 5 commits into from
Sep 20, 2021
Merged

Add make the name of wsi reader lowercase #2973

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e1b0ac8
Add make the name of wsi reader lowercase
bhashemian Sep 17, 2021
035a131
Merge branch 'dev' into fix-wsi-reader-name
bhashemian Sep 17, 2021
6abb927
Merge branch 'dev' of github.com:Project-MONAI/MONAI into fix-wsi-rea…
bhashemian Sep 20, 2021
0b91385
Merge branch 'dev' into fix-wsi-reader-name
bhashemian Sep 20, 2021
7c47581
Merge branch 'fix-wsi-reader-name' of github.com:drbeh/MONAI into fix…
bhashemian Sep 20, 2021
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4 changes: 2 additions & 2 deletions monai/apps/pathology/data/datasets.py
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Original file line number Diff line number Diff line change
Expand Up @@ -64,7 +64,7 @@ def __init__(
self.patch_size = ensure_tuple_rep(patch_size, 2)

self.image_path_list = list({x["image"] for x in self.data})
self.image_reader_name = image_reader_name
self.image_reader_name = image_reader_name.lower()
self.image_reader = WSIReader(image_reader_name)
self.wsi_object_dict = None
if self.image_reader_name != "openslide":
Expand Down Expand Up @@ -190,7 +190,7 @@ def __init__(
self.patch_size = ensure_tuple_rep(patch_size, 2)

# set up whole slide image reader
self.image_reader_name = image_reader_name
self.image_reader_name = image_reader_name.lower()
self.image_reader = WSIReader(image_reader_name)

# process data and create a list of dictionaries containing all required data and metadata
Expand Down