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@Nic-Ma Nic-Ma commented Nov 3, 2021

Fixes #3253 .

Description

This PR fixed the spatial shape issue in NumpyReader and added channel_dim.

Status

Ready

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

@Nic-Ma Nic-Ma changed the title [WIP] 3253 Fix the spatial shape issue in NumpyReader and add channel dim 3253 Fix the spatial shape issue in NumpyReader and add channel dim Nov 4, 2021
@Nic-Ma Nic-Ma marked this pull request as ready for review November 4, 2021 00:18
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Nic-Ma commented Nov 4, 2021

/black

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Nic-Ma commented Nov 4, 2021

/build

@ericspod
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ericspod commented Nov 4, 2021

I asked @danieltudosiu to have a look at this which relates to an issue of his.

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Nic-Ma commented Nov 4, 2021

Hi @danieltudosiu ,

Could you please help review the PR or download it to verify locally?

Thanks in advance.

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Nic-Ma commented Nov 4, 2021

/build

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Nic-Ma commented Nov 4, 2021

/integration-test

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Nic-Ma commented Nov 5, 2021

/build

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@Nic-Ma
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Nic-Ma commented Nov 5, 2021

/build

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Nic-Ma commented Nov 5, 2021

Hi @ericspod ,

Do you have any comments that I need to address first?
As this is a bug fix, I hope we can complete it soon.

Thanks in advance.

@danieltudosiu
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Hi Nick,

Having a look at it now. Should hear from me in about 30min max.

Cheers!

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Nic-Ma commented Nov 5, 2021

/build

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Yeap, it is good.

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Thanks, it looks good to me.

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wyli commented Nov 6, 2021

/build

@wyli wyli enabled auto-merge (squash) November 6, 2021 11:48
@wyli wyli disabled auto-merge November 6, 2021 12:18
@Nic-Ma Nic-Ma enabled auto-merge (squash) November 6, 2021 14:47
Signed-off-by: Nic Ma <nma@nvidia.com>
@Nic-Ma Nic-Ma mentioned this pull request Nov 6, 2021
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Nic-Ma commented Nov 6, 2021

/black

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Nic-Ma commented Nov 6, 2021

/build

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wyli commented Nov 6, 2021

/build

@Nic-Ma Nic-Ma merged commit 6ab6a99 into Project-MONAI:dev Nov 6, 2021
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Numpy Loader doesn't create the right metadata

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