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d1d81cc
first commit
KumoLiu Sep 21, 2022
4136ec7
add unittest
KumoLiu Sep 21, 2022
93437f4
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 21, 2022
ae0862c
add dictionary tranform
KumoLiu Sep 21, 2022
1c99929
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 21, 2022
bc5cf91
Merge remote-tracking branch 'origin/dev' into add-whole-postprocess
KumoLiu Sep 21, 2022
69df77c
Merge branch 'add-whole-postprocess' of https://github.com/KumoLiu/MO…
KumoLiu Sep 21, 2022
fac143c
update docstring and doc
KumoLiu Sep 22, 2022
59f42c4
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 22, 2022
5251f22
Remove redundant file RUA.py
bhashemian Sep 23, 2022
f4d6c78
Merge branch 'dev' into add-whole-postprocess
bhashemian Sep 23, 2022
9e25813
Merge remote-tracking branch 'origin/dev' into add-whole-postprocess
KumoLiu Sep 26, 2022
324bb74
update apps.rst
KumoLiu Sep 26, 2022
e48e7a2
Merge branch 'dev' into add-whole-postprocess
bhashemian Sep 26, 2022
826c961
add `GenerateSuccinctContour`
KumoLiu Sep 27, 2022
b253302
Merge branch 'add-whole-postprocess' of https://github.com/KumoLiu/MO…
KumoLiu Sep 27, 2022
48f796f
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 27, 2022
dc280c9
update unittest in `PostProcessHoVerNetOutput`
KumoLiu Sep 28, 2022
46c7c44
Merge remote-tracking branch 'origin/dev' into add-whole-postprocess
KumoLiu Sep 28, 2022
cdd9634
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 28, 2022
e01cb5f
fix CI
KumoLiu Sep 28, 2022
d815429
Merge branch 'add-whole-postprocess' of https://github.com/KumoLiu/MO…
KumoLiu Sep 28, 2022
724edd2
Merge branch 'dev' into add-whole-postprocess
bhashemian Oct 3, 2022
458e37e
Merge remote-tracking branch 'origin/dev' into add-whole-postprocess
KumoLiu Oct 12, 2022
99ff3a3
refactor `PostProcessHoVerNetOutput`
KumoLiu Oct 12, 2022
3fcadb5
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Oct 12, 2022
c141378
finish array refactor
KumoLiu Oct 13, 2022
aa8014c
Merge branch 'add-whole-postprocess' of https://github.com/KumoLiu/MO…
KumoLiu Oct 13, 2022
5258152
Merge remote-tracking branch 'origin/dev' into add-whole-postprocess
KumoLiu Oct 13, 2022
03621a2
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Oct 13, 2022
130d401
Merge branch 'add-whole-postprocess' of https://github.com/KumoLiu/MO…
KumoLiu Oct 13, 2022
0dc41b5
refactor dict transform
KumoLiu Oct 13, 2022
38cda05
Merge remote-tracking branch 'origin/dev' into add-whole-postprocess
KumoLiu Oct 13, 2022
1e752cf
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Oct 13, 2022
4a11fee
update init and minor fix
KumoLiu Oct 13, 2022
729836e
Merge branch 'add-whole-postprocess' of https://github.com/KumoLiu/MO…
KumoLiu Oct 13, 2022
93a56db
minor fix
KumoLiu Oct 13, 2022
0ce10fb
fix flake8
KumoLiu Oct 13, 2022
a6b9619
remove outdated unittest
KumoLiu Oct 13, 2022
64063b8
minor fix
KumoLiu Oct 13, 2022
3d0d68a
Merge branch 'dev' into add-whole-postprocess
bhashemian Oct 14, 2022
5ff30be
Merge remote-tracking branch 'origin/dev' into add-whole-postprocess
KumoLiu Oct 17, 2022
fefdead
Merge branch 'add-whole-postprocess' of https://github.com/KumoLiu/MO…
KumoLiu Oct 17, 2022
5a591cf
fix flake8
KumoLiu Oct 17, 2022
a4406b7
minor fix
KumoLiu Oct 17, 2022
919235f
Merge remote-tracking branch 'origin/dev' into add-whole-postprocess
KumoLiu Oct 18, 2022
3a1f4dc
Merge branch 'dev' into add-whole-postprocess
bhashemian Oct 27, 2022
849269d
add unit tests
KumoLiu Oct 28, 2022
5d8fc14
Merge branch 'add-whole-postprocess' of https://github.com/KumoLiu/MO…
KumoLiu Oct 28, 2022
c75d6d4
Merge remote-tracking branch 'origin/dev' into add-whole-postprocess
KumoLiu Oct 28, 2022
11db141
minor fix
KumoLiu Oct 28, 2022
1d2a3c0
Merge remote-tracking branch 'origin/dev' into add-whole-postprocess
KumoLiu Nov 1, 2022
612a5aa
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Nov 1, 2022
7a4cafb
fix flake8
KumoLiu Nov 1, 2022
495c516
remove test data
KumoLiu Nov 2, 2022
c615e56
auto updates (#5445)
monai-bot Nov 1, 2022
3669e4a
Update monai/apps/pathology/transforms/post/array.py
KumoLiu Nov 2, 2022
c7afc03
Merge remote-tracking branch 'origin/dev' into add-whole-postprocess
KumoLiu Nov 2, 2022
25d74bc
Merge branch 'dev' into add-whole-postprocess
bhashemian Nov 7, 2022
0038f34
Merge branch 'dev' into add-whole-postprocess
Nic-Ma Nov 7, 2022
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16 changes: 16 additions & 0 deletions docs/source/apps.rst
Original file line number Diff line number Diff line change
Expand Up @@ -131,6 +131,14 @@ Applications
:members:

.. automodule:: monai.apps.pathology.transforms.post.array
.. autoclass:: GenerateSuccinctContour
:members:
.. autoclass:: GenerateInstanceContour
:members:
.. autoclass:: GenerateInstanceCentroid
:members:
.. autoclass:: GenerateInstanceType
:members:
.. autoclass:: Watershed
:members:
.. autoclass:: GenerateWatershedMask
Expand All @@ -143,6 +151,14 @@ Applications
:members:

.. automodule:: monai.apps.pathology.transforms.post.dictionary
.. autoclass:: GenerateSuccinctContourd
:members:
.. autoclass:: GenerateInstanceContourd
:members:
.. autoclass:: GenerateInstanceCentroidd
:members:
.. autoclass:: GenerateInstanceTyped
:members:
.. autoclass:: Watershedd
:members:
.. autoclass:: GenerateWatershedMaskd
Expand Down
16 changes: 16 additions & 0 deletions monai/apps/pathology/transforms/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,10 @@
from .post.array import (
GenerateDistanceMap,
GenerateInstanceBorder,
GenerateInstanceCentroid,
GenerateInstanceContour,
GenerateInstanceType,
GenerateSuccinctContour,
GenerateWatershedMarkers,
GenerateWatershedMask,
Watershed,
Expand All @@ -23,6 +27,18 @@
GenerateInstanceBorderD,
GenerateInstanceBorderd,
GenerateInstanceBorderDict,
GenerateInstanceCentroidD,
GenerateInstanceCentroidd,
GenerateInstanceCentroidDict,
GenerateInstanceContourD,
GenerateInstanceContourd,
GenerateInstanceContourDict,
GenerateInstanceTypeD,
GenerateInstanceTyped,
GenerateInstanceTypeDict,
GenerateSuccinctContourD,
GenerateSuccinctContourd,
GenerateSuccinctContourDict,
GenerateWatershedMarkersD,
GenerateWatershedMarkersd,
GenerateWatershedMarkersDict,
Expand Down
16 changes: 16 additions & 0 deletions monai/apps/pathology/transforms/post/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,10 @@
from .array import (
GenerateDistanceMap,
GenerateInstanceBorder,
GenerateInstanceCentroid,
GenerateInstanceContour,
GenerateInstanceType,
GenerateSuccinctContour,
GenerateWatershedMarkers,
GenerateWatershedMask,
Watershed,
Expand All @@ -23,6 +27,18 @@
GenerateInstanceBorderD,
GenerateInstanceBorderd,
GenerateInstanceBorderDict,
GenerateInstanceCentroidD,
GenerateInstanceCentroidd,
GenerateInstanceCentroidDict,
GenerateInstanceContourD,
GenerateInstanceContourd,
GenerateInstanceContourDict,
GenerateInstanceTypeD,
GenerateInstanceTyped,
GenerateInstanceTypeDict,
GenerateSuccinctContourD,
GenerateSuccinctContourd,
GenerateSuccinctContourDict,
GenerateWatershedMarkersD,
GenerateWatershedMarkersd,
GenerateWatershedMarkersDict,
Expand Down
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