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fix GeneralizedDiceLoss #5468

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Merged
wyli merged 1 commit into from
Nov 4, 2022
Merged

fix GeneralizedDiceLoss #5468

wyli merged 1 commit into from
Nov 4, 2022

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@KumoLiu KumoLiu commented Nov 4, 2022 •
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Signed-off-by: KumoLiu yunl@nvidia.com

Fixes #5466.

Description

In GeneralizedDiceLoss, now it do channel reduction before reduction, remove channel reduction in this PR.

MONAI/monai/losses/dice.py

Lines 360 to 363 in c38d503

final_reduce_dim = 0 if self.batch else 1
numer = 2.0 * (intersection * w).sum(final_reduce_dim, keepdim=True) + self.smooth_nr
denom = (denominator * w).sum(final_reduce_dim, keepdim=True) + self.smooth_dr
f: torch.Tensor = 1.0 - (numer / denom)

Types of changes

  • Non-breaking change (fix or new feature that would not break existing functionality).
  • Breaking change (fix or new feature that would cause existing functionality to change).
  • New tests added to cover the changes.
  • Integration tests passed locally by running ./runtests.sh -f -u --net --coverage.
  • Quick tests passed locally by running ./runtests.sh --quick --unittests --disttests.
  • In-line docstrings updated.
  • Documentation updated, tested make html command in the docs/ folder.

@KumoLiu
fix Project-MONAI#5466
b32d64c 
Signed-off-by: KumoLiu <yunl@nvidia.com>
@KumoLiu KumoLiu requested review from Nic-Ma, ericspod, rijobro and wyli and removed request for wyli November 4, 2022 10:31
@KumoLiu KumoLiu mentioned this pull request Nov 4, 2022
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wyli commented Nov 4, 2022

/build

@wyli wyli enabled auto-merge (squash) November 4, 2022 13:39
@wyli wyli merged commit e03ecd4 into Project-MONAI:dev Nov 4, 2022
@KumoLiu KumoLiu deleted the fix-generalized-dice-loss branch November 4, 2022 14:51
wyli pushed a commit that referenced this pull request Nov 6, 2022
@KumoLiu @wyli
fix GeneralizedDiceLoss (#5468)
531a631 
Signed-off-by: KumoLiu <yunl@nvidia.com>

Fixes #5466.

### Description
In `GeneralizedDiceLoss`, now it do channel reduction before reduction,
remove channel reduction in this PR.

https://github.com/Project-MONAI/MONAI/blob/c38d503a587f1779914bd071a1b2d66a6d9080c2/monai/losses/dice.py#L360-L363

### Types of changes
<!--- Put an `x` in all the boxes that apply, and remove the not
applicable items -->
- [x] Non-breaking change (fix or new feature that would not break
existing functionality).
- [ ] Breaking change (fix or new feature that would cause existing
functionality to change).
- [x] New tests added to cover the changes.
- [ ] Integration tests passed locally by running `./runtests.sh -f -u
--net --coverage`.
- [ ] Quick tests passed locally by running `./runtests.sh --quick
--unittests --disttests`.
- [ ] In-line docstrings updated.
- [ ] Documentation updated, tested `make html` command in the `docs/`
folder.

Signed-off-by: KumoLiu <yunl@nvidia.com>
wyli added a commit to wyli/MONAI that referenced this pull request Jul 25, 2023
@wyli
Revert "fix GeneralizedDiceLoss (Project-MONAI#5468)"
8bb0fae 
This reverts commit e03ecd4.

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
wyli added a commit to wyli/MONAI that referenced this pull request Jul 26, 2023
@wyli
Revert "fix GeneralizedDiceLoss (Project-MONAI#5468)"
541151c 
This reverts commit e03ecd4.

Signed-off-by: Wenqi Li <wenqil@nvidia.com>
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@wyli wyli wyli approved these changes

@Nic-Ma Nic-Ma Awaiting requested review from Nic-Ma Nic-Ma is a code owner

@ericspod ericspod Awaiting requested review from ericspod ericspod is a code owner

@rijobro rijobro Awaiting requested review from rijobro

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Generalized Dice Loss - Reduction="none" + batch=True

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@KumoLiu @wyli